Genome: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (NC_003197.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 126702-126801 (-)TPP125686-126670 (-)tbpA

Thiamine-binding periplasmic protein

DOOR ID: 46250
STM0106 (thiQ),
STM0107 (thiP),
STM0108 (tbpA)
View Structure
2 870506-870650 (+)MOCO871648-872161 (+)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 46386
STM0802 (moaA),
STM0803 (moaB),
STM0804 (moaC),
STM0805 (moaD),
STM0806 (moaE),
STM0807 (ybhL)
View Structure
3 1931931-1932032 (+)yybP-ykoY1932089-1932710 (+)mntP

Probable manganese efflux pump MntP
STM1834Single gene

DOOR ID: 1464175
STM1834 (yebN) View Structure
4 2113898-2114073 (-)cobalamin2112421-2113801 (-)cbiA

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase) [Cleaved into: Cobyrinate a;c-diamide synthase; N-terminally processed]

DOOR ID: 46604
STM2015 (erfK),
STM2016 (cobT),
STM2017 (cobS),
STM2018 (cobU),
STM2019 (cbiP),
STM2020 (cbiO),
STM2021 (cbiQ),
STM2022 (cbiN),
STM2023 (cbiM),
STM2024 (cbiL),
STM2025 (cbiK),
STM2026 (cbiJ),
STM2027 (cbiH),
STM2028 (cbiG),
STM2029 (cbiF),
STM2030 (cbiT),
STM2031 (cbiE),
STM2032 (cbiD),
STM2033 (cbiC),
STM2034 (cbiB),
STM2035 (cbiA)
View Structure
5 2241877-2241973 (-)TPP2241047-2241845 (-)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 46620
STM2145 (yegW),
STM2146 (thiD),
STM2147 (thiM)
View Structure
6 3358610-3358808 (-)FMN3357850-3358504 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
STM3195Single gene

DOOR ID: 1464619
STM3195 (ribB) View Structure
7 4347851-4348044 (+)cobalamin4348109-4349954 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 47018
STM4130 (btuB),
STM4131 (murI)
View Structure
8 4382472-4382635 (-)TPP4380490-4382386 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 47024
STM4159 (thiH),
STM4160 (thiG),
STM4162 (thiF),
STM4163 (thiE),
STM4164 (thiC)
View Structure
9 4581434-4581478 (+)mini-ykkC4581499-4581817 (+)sugE

STM4338Single gene

DOOR ID: 1465001
STM4338 (sugE) View Structure