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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
688162-688247
(-)
ZMP-ZTP
687275-688139 (-)
folD2
Bifunctional protein FolD 1 [Includes: Methylenetetrahydrofolate dehydrogenase ]
SAV_543
Single gene
DOOR ID:
1459979
SAV_543
(folD2)
View Structure
2
2009622-2009780
(-)
ydaO-yuaA
2008711-2009617 (-)
SAV_1640
SAV_1640
Single gene
DOOR ID:
1460592
SAV_1640
View Structure
3
2496008-2496226
(+)
cobalamin
2496388-2498707 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
SAV_2046
Single gene
DOOR ID:
1460778
SAV_2046
(metE)
View Structure
4
2501237-2501320
(-)
cobalamin
2500954-2501176 (-)
SAV_2050
SAV_2050
Operon
DOOR ID:
45188
SAV_2049,
SAV_2050
View Structure
5
2682986-2683166
(+)
TPP
2683169-2684009 (+)
SAV_2203
SAV_2203
Single gene
DOOR ID:
1460866
SAV_2203
View Structure
6
2842211-2842427
(+)
cobalamin
2843584-2844349 (-)
SAV_2334
SAV_2334
Operon
DOOR ID:
45243
SAV_2334,
SAV_2335
View Structure
7
2949550-2949709
(-)
ydaO-yuaA
2948760-2949537 (-)
SAV_2420
SAV_2420
Single gene
DOOR ID:
1460947
SAV_2420
View Structure
8
3220438-3220543
(-)
TPP
3219271-3220357 (-)
SAV_2620
SAV_2620
Operon
DOOR ID:
45299
SAV_2618,
SAV_2619,
SAV_2620
View Structure
9
3402031-3402127
(+)
glycine
3402269-3403388 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SAV_2773
Single gene
DOOR ID:
1461126
SAV_2773
(gcvT)
View Structure
10
3688669-3688777
(-)
SAM-IV
3687592-3688159 (-)
SAV_2940
SAV_2940
Single gene
DOOR ID:
1461204
SAV_2940
View Structure
11
3688864-3688980
(+)
SAM-IV
3689025-3689523 (+)
SAV_2941
SAV_2941
Operon
DOOR ID:
45366
SAV_2941,
SAV_2942
View Structure
12
3783181-3783274
(+)
cobalamin
3783419-3785801 (+)
nrdL
SAV_3026
Operon
DOOR ID:
45382
SAV_3026
(nrdL)
,
SAV_3027
(nrdM)
View Structure
13
4241916-4242005
(-)
ZMP-ZTP
4240426-4241875 (-)
glyA
SAV_3419
Single gene
DOOR ID:
1461450
SAV_3419
(glyA)
View Structure
14
4296121-4296312
(+)
ydaO-yuaA
4296319-4297516 (+)
SAV_3464
SAV_3464
Operon
DOOR ID:
45463
SAV_3464,
SAV_3465
View Structure
15
4374567-4374746
(-)
ydaO-yuaA
4373878-4374562 (-)
SAV_3534
SAV_3534
Single gene
DOOR ID:
1461512
SAV_3534
View Structure
16
4858480-4858626
(-)
SAM
4857163-4858462 (-)
thrC3
SAV_3934
Operon
DOOR ID:
45537
SAV_3933,
SAV_3934
(thrC3)
View Structure
17
5051477-5051634
(-)
ydaO-yuaA
5050421-5051465 (-)
SAV_4118
SAV_4118
Single gene
DOOR ID:
1461829
SAV_4118
View Structure
18
5233679-5233835
(-)
TPP
5230837-5231695 (+)
SAV_4264
SAV_4264
Single gene
DOOR ID:
1461905
SAV_4264
View Structure
19
5911718-5911883
(-)
ydaO-yuaA
5911237-5911714 (-)
SAV_4862
SAV_4862
Single gene
DOOR ID:
1462194
SAV_4862
View Structure
20
7059331-7059463
(-)
cobalamin
7057935-7059213 (-)
SAV_5850
SAV_5850
Operon
DOOR ID:
45892
SAV_5846,
SAV_5847,
SAV_5848,
SAV_5849,
SAV_5850
View Structure
21
7291233-7291349
(+)
SAM-IV
7291525-7292899 (+)
SAV_6057
SAV_6057
Single gene
DOOR ID:
1462768
SAV_6057
View Structure
22
7332842-7332955
(-)
TPP
7331480-7331681 (-)
thiS
SAV_6094
Operon
DOOR ID:
45942
SAV_6090,
SAV_6091
(nfo)
,
SAV_6092
(pkn28)
,
SAV_6093
(thiG)
,
SAV_6094
(thiS)
,
SAV_6095
(goxB)
View Structure
23
7696990-7697133
(-)
cobalamin
7695930-7696872 (-)
cobD
SAV_6417
Operon
DOOR ID:
46004
SAV_6411
(cobI)
,
SAV_6412
(cobB)
,
SAV_6413
(cobA)
,
SAV_6414
(chlI)
,
SAV_6415
(cobN)
,
SAV_6416
(cobQ1)
,
SAV_6417
(cobD)
View Structure
24
8236206-8236335
(+)
FMN
8236485-8237094 (+)
ribC
SAV_6902
Operon
DOOR ID:
46107
SAV_6902
(ribC)
,
SAV_6903,
SAV_6904
(ribA1)
,
SAV_6905
(ribH)
,
SAV_6906
(hisE)
,
SAV_6907
(hisG)
,
SAV_6908
View Structure
25
8344959-8345054
(+)
glycine
8345153-8348117 (+)
gcvB
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
SAV_6987
Single gene
DOOR ID:
1463155
SAV_6987
(gcvB)
View Structure
26
8461632-8461828
(-)
ydaO-yuaA
8461154-8461628 (-)
SAV_7099
SAV_7099
Operon
DOOR ID:
46139
SAV_7098,
SAV_7099
View Structure
27
8541474-8541695
(+)
ydaO-yuaA
8542082-8542616 (+)
SAV_7174
SAV_7174
Single gene
DOOR ID:
1463253
SAV_7174
View Structure
28
8583422-8583516
(-)
TPP
8581220-8582018 (-)
thiD
SAV_7205
Operon
DOOR ID:
46158
SAV_7205
(thiD)
,
SAV_7206
View Structure
29
8585292-8585400
(+)
SAM-IV
8585755-8586712 (+)
SAV_7208
SAV_7208
Operon
DOOR ID:
46159
SAV_7208,
SAV_7209
View Structure
Genome:
Streptomyces avermitilis MA-4680
(
NC_003155.4
);
Phylum:
Actinobacteria
a:30:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"688162-688247";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"687275-688139";i:10;s:1:"-";i:11;s:5:"folD2";i:12;s:80:"Bifunctional protein FolD 1 [Includes: Methylenetetrahydrofolate dehydrogenase ]";i:13;s:7:"SAV_543";i:14;s:11:"Single gene";i:15;s:7:"1459979";i:16;s:14:"SAV_543(folD2)";i:17;s:189:"histidine biosynthetic process [GO:0000105]; methionine biosynthetic process [GO:0009086]; purine nucleotide biosynthetic process [GO:0006164]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2009622-2009780";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2008711-2009617";i:10;s:1:"-";i:11;s:8:"SAV_1640";i:12;s:0:"";i:13;s:8:"SAV_1640";i:14;s:11:"Single gene";i:15;s:7:"1460592";i:16;s:8:"SAV_1640";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2496008-2496226";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2496388-2498707";i:10;s:1:"+";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:8:"SAV_2046";i:14;s:11:"Single gene";i:15;s:7:"1460778";i:16;s:14:"SAV_2046(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2501237-2501320";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2500954-2501176";i:10;s:1:"-";i:11;s:8:"SAV_2050";i:12;s:0:"";i:13;s:8:"SAV_2050";i:14;s:6:"Operon";i:15;s:5:"45188";i:16;s:17:"SAV_2049;SAV_2050";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2682986-2683166";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2683169-2684009";i:10;s:1:"+";i:11;s:8:"SAV_2203";i:12;s:0:"";i:13;s:8:"SAV_2203";i:14;s:11:"Single gene";i:15;s:7:"1460866";i:16;s:8:"SAV_2203";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2842211-2842427";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2843584-2844349";i:10;s:1:"-";i:11;s:8:"SAV_2334";i:12;s:0:"";i:13;s:8:"SAV_2334";i:14;s:6:"Operon";i:15;s:5:"45243";i:16;s:17:"SAV_2334;SAV_2335";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2949550-2949709";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2948760-2949537";i:10;s:1:"-";i:11;s:8:"SAV_2420";i:12;s:0:"";i:13;s:8:"SAV_2420";i:14;s:11:"Single gene";i:15;s:7:"1460947";i:16;s:8:"SAV_2420";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3220438-3220543";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3219271-3220357";i:10;s:1:"-";i:11;s:8:"SAV_2620";i:12;s:0:"";i:13;s:8:"SAV_2620";i:14;s:6:"Operon";i:15;s:5:"45299";i:16;s:26:"SAV_2618;SAV_2619;SAV_2620";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3402031-3402127";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3402269-3403388";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"SAV_2773";i:14;s:11:"Single gene";i:15;s:7:"1461126";i:16;s:14:"SAV_2773(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3688669-3688777";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3687592-3688159";i:10;s:1:"-";i:11;s:8:"SAV_2940";i:12;s:0:"";i:13;s:8:"SAV_2940";i:14;s:11:"Single gene";i:15;s:7:"1461204";i:16;s:8:"SAV_2940";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3688864-3688980";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3689025-3689523";i:10;s:1:"+";i:11;s:8:"SAV_2941";i:12;s:0:"";i:13;s:8:"SAV_2941";i:14;s:6:"Operon";i:15;s:5:"45366";i:16;s:17:"SAV_2941;SAV_2942";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3783181-3783274";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3783419-3785801";i:10;s:1:"+";i:11;s:4:"nrdL";i:12;s:0:"";i:13;s:8:"SAV_3026";i:14;s:6:"Operon";i:15;s:5:"45382";i:16;s:29:"SAV_3026(nrdL);SAV_3027(nrdM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4241916-4242005";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"4240426-4241875";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:0:"";i:13;s:8:"SAV_3419";i:14;s:11:"Single gene";i:15;s:7:"1461450";i:16;s:14:"SAV_3419(glyA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4296121-4296312";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"4296319-4297516";i:10;s:1:"+";i:11;s:8:"SAV_3464";i:12;s:0:"";i:13;s:8:"SAV_3464";i:14;s:6:"Operon";i:15;s:5:"45463";i:16;s:17:"SAV_3464;SAV_3465";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis MA-4680";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4374567-4374746";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"4373878-4374562";i:10;s:1:"-";i:11;s:8:"SAV_3534";i:12;s:0:"";i:13;s:8:"SAV_3534";i:14;s:11:"Single gene";i:15;s:7:"1461512";i:16;s:8:"SAV_3534";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_003155.4";i:2;s:32:"Streptomyces avermitilis 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