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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
366347-366393
(+)
mini-ykkC
366412-366727 (+)
sugE
YPO0355
Single gene
DOOR ID:
1458037
YPO0355
(sugE)
View Structure
2
567061-567198
(-)
TPP
565993-566986 (-)
tbpA
Thiamine-binding periplasmic protein
YPO0522
Operon
DOOR ID:
44196
YPO0520
(thiQ)
,
YPO0521
(thiP)
,
YPO0522
(tbpA)
View Structure
3
717671-717860
(+)
FMN
718101-718755 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YPO0658
Single gene
DOOR ID:
1458168
YPO0658
(ribB)
View Structure
4
1306720-1306866
(+)
MOCO
1307933-1308413 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YPO1160
Operon
DOOR ID:
44323
YPO1159
(moaA)
,
YPO1160
(moaC)
,
YPO1161
(moaD)
,
YPO1162
(moaE)
View Structure
5
1999916-2000115
(-)
yybP-ykoY
1999335-1999905 (-)
yebN
Putative manganese efflux pump MntP
YPO1754
Single gene
DOOR ID:
1458644
YPO1754
(yebN)
View Structure
6
2918170-2918233
(-)
fluoride
2917685-2918069 (-)
crcB
Putative fluoride ion transporter CrcB 1
YPO2596
Single gene
DOOR ID:
1459017
YPO2596
(crcB)
View Structure
7
3197047-3197151
(-)
TPP
3196122-3196923 (-)
thiD
Putative phosphomethylpyrimidine kinase
YPO2859
Single gene
DOOR ID:
1459119
YPO2859
(thiD)
View Structure
8
4190343-4190468
(+)
TPP
4190601-4192647 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
YPO3739
Operon
DOOR ID:
44789
YPO3738,
YPO3739
(thiC)
,
YPO3740
(thiE)
,
YPO3741
(thiF)
View Structure
9
4392988-4393250
(-)
cobalamin
4391023-4392919 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
YPO3910
Operon
DOOR ID:
44825
YPO3909
(murI)
,
YPO3910
(btuB)
View Structure
Genome:
Yersinia pestis CO92
(
NC_003143.1
);
Phylum:
Gammaproteobacteria
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