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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
173892-174006
(-)
FMN
172658-173759 (-)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
spr0164
Operon
DOOR ID:
41960
spr0161
(ribH)
,
spr0162
(ribA)
,
spr0163
(ribC)
,
spr0164
(ribD)
View Structure
2
368910-368998
(+)
glycine
369088-370411 (+)
dagA
D-alanine glycine permease
spr0369
Single gene
DOOR ID:
1453586
spr0369
(dagA)
View Structure
3
433445-433679
(+)
FMN
433828-434407 (+)
spr0433
Riboflavin transporter
spr0433
Operon
DOOR ID:
42023
spr0433,
spr0434,
spr0435,
spr0436
View Structure
4
636353-636441
(+)
TPP
636655-637324 (+)
spr0628
Aminopyrimidine aminohydrolase
spr0628
Single gene
DOOR ID:
1453671
spr0628
View Structure
5
639235-639323
(+)
TPP
639550-640144 (+)
spr0631
spr0631
Operon
DOOR ID:
42071
spr0631,
spr0632
(ABC-NBD)
,
spr0633
View Structure
6
645926-646024
(-)
TPP
645050-645842 (-)
thiD
Phosphomethylpyrimidine kinase
spr0638
Single gene
DOOR ID:
1453672
spr0638
(thiD)
View Structure
7
1634825-1634920
(+)
purine
1635319-1635901 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
spr1662
Operon
DOOR ID:
42311
spr1662
(xpt)
,
spr1663
(pbuX)
View Structure
8
1998827-1998929
(-)
TPP
1998465-1998756 (-)
ABC-MSP
spr2005
Operon
DOOR ID:
42388
spr2002
(ABC-NBD)
,
spr2003,
spr2004
(ABC-MSP)
,
spr2005
View Structure
Genome:
Streptococcus pneumoniae R6
(
NC_003098.1
);
Phylum:
Firmicutes
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