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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
580111-580189
(-)
sam-alpha
578882-580067 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
SMc02217
Single gene
DOOR ID:
1449243
SMc02217
(metZ)
View Structure
2
954760-954963
(+)
cobalamin
955076-956321 (+)
SMc00982
Putative dioxygenase Rieske 2Fe-2S family protein
SMc00982
Operon
DOOR ID:
40084
SMc00982,
SMc00981
View Structure
3
1674904-1674991
(-)
glycine
1673621-1674761 (-)
gcvT
Probable aminomethyltransferase (Glycine cleavage system T protein) (0)
SMc02047
Operon
DOOR ID:
40213
SMc02049
(gcvP)
,
SMc02048
(gcvH)
,
SMc02047
(gcvT)
View Structure
4
1999554-1999767
(-)
cobalamin
1998825-1999509 (-)
SMc00166
5;6-dimethylbenzimidazole synthase (DMB synthase) (9)
SMc00166
Single gene
DOOR ID:
1449837
SMc00166
View Structure
5
2122496-2122911
(-)
cobalamin
2121849-2122377 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
SMc04305
Operon
DOOR ID:
40280
SMc04302
(cobO)
,
SMc04303
(cobN)
,
SMc04304
(cobW)
,
SMc04305
(cobU)
View Structure
6
2398173-2398337
(+)
FMN
2398373-2398901 (+)
ribH
6;7-dimethyl-8-ribityllumazine synthase 2 (DMRL synthase 2) (LS 2) (Lumazine synthase 2) (8)
SMc01609
Single gene
DOOR ID:
1450029
SMc01609
(ribH)
View Structure
7
3461766-3461843
(+)
sam-alpha
3462914-3463931 (+)
galM
Aldose 1-epimerase (Galactose mutarotase)
SMc03798
Operon
DOOR ID:
40518
SMc03797
(metA)
,
SMc03798
(galM)
View Structure
8
3532865-3532978
(+)
TPP
3533026-3534055 (+)
tbpA
Thiamine-binding periplasmic protein
SMc03869
Operon
DOOR ID:
40537
SMc03869
(tbpA)
,
SMc03870
(thiP)
,
SMc03871
View Structure
Genome:
Sinorhizobium meliloti 1021
(
NC_003047.1
);
Phylum:
Alphaproteobacteria
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