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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15949-16047
(+)
SAM
16107-17076 (+)
SAS0012
SAS0012
Single gene
DOOR ID:
1440141
SAS0012
View Structure
2
409191-409293
(+)
purine
409523-410102 (+)
SAS0364
Xanthine phosphoribosyltransferase (XPRTase) (2)
SAS0364
Operon
DOOR ID:
35108
SAS0364,
SAS0365,
SAS0366,
SAS0367
(guaA)
View Structure
3
755252-755298
(-)
PreQ1
754413-755082 (-)
SAS0677
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SAS0677
Operon
DOOR ID:
35175
SAS0675,
SAS0676,
SAS0677
View Structure
4
861019-861122
(+)
SAM
861210-862236 (+)
SAS0779
Methionine import ATP-binding protein MetN 2
SAS0779
Operon
DOOR ID:
35193
SAS0779,
SAS0780,
SAS0781
View Structure
5
902501-902591
(+)
preQ1-II
903596-903974 (+)
SAS0825
SAS0825
Single gene
DOOR ID:
1440481
SAS0825
View Structure
6
979834-979940
(+)
yybP-ykoY
980015-980819 (+)
SAS0890
SAS0890
Single gene
DOOR ID:
1440504
SAS0890
View Structure
7
1086334-1086434
(-)
TPP
1085681-1086257 (-)
SAS1013
SAS1013
Operon
DOOR ID:
35234
SAS1011,
SAS1012,
SAS1013
View Structure
8
1429786-1429961
(+)
lysine
1430042-1431248 (+)
SAS1334
SAS1334
Operon
DOOR ID:
35295
SAS1334,
SAS1335,
SAS1336
(dapA)
,
SAS1337,
SAS1338
View Structure
9
1551305-1551439
(-)
FMN
1550697-1551243 (-)
SAS1425
SAS1425
Single gene
DOOR ID:
1440698
SAS1425
View Structure
10
1602168-1602265
(-)
glycine
1601001-1602093 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SAS1475
Operon
DOOR ID:
35330
SAS1473,
SAS1474,
SAS1475
(gcvT)
View Structure
11
1732415-1732590
(-)
lysine
1730776-1732270 (-)
SAS1610
SAS1610
Single gene
DOOR ID:
1440738
SAS1610
View Structure
12
1845588-1845723
(-)
FMN
1844417-1845461 (-)
SAS1694
SAS1694
Operon
DOOR ID:
35376
SAS1691
(ribH)
,
SAS1692,
SAS1693,
SAS1694
View Structure
13
1860045-1860156
(-)
SAM
1858745-1859939 (-)
SAS1711
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SAS1711
Single gene
DOOR ID:
1440792
SAS1711
View Structure
14
2155664-2155766
(-)
TPP
2154894-2155584 (-)
SAS1998
Aminopyrimidine aminohydrolase (Thiaminase II)
SAS1998
Operon
DOOR ID:
35443
SAS1995
(thiE)
,
SAS1996,
SAS1997,
SAS1998
View Structure
15
2211132-2211348
(-)
glmS
2209124-2210930 (-)
SAS2055
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
SAS2055
Single gene
DOOR ID:
1440919
SAS2055
View Structure
16
2372869-2372964
(-)
SAM
2371478-2372858 (-)
SAS2219
SAS2219
Single gene
DOOR ID:
1440986
SAS2219
View Structure
Genome:
Staphylococcus aureus subsp. aureus MSSA476
(
NC_002953.3
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15949-16047";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16107-17076";i:10;s:1:"+";i:11;s:7:"SAS0012";i:12;s:0:"";i:13;s:7:"SAS0012";i:14;s:11:"Single gene";i:15;s:7:"1440141";i:16;s:7:"SAS0012";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"409191-409293";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"409523-410102";i:10;s:1:"+";i:11;s:7:"SAS0364";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:7:"SAS0364";i:14;s:6:"Operon";i:15;s:5:"35108";i:16;s:37:"SAS0364;SAS0365;SAS0366;SAS0367(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"755252-755298";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"754413-755082";i:10;s:1:"-";i:11;s:7:"SAS0677";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:7:"SAS0677";i:14;s:6:"Operon";i:15;s:5:"35175";i:16;s:23:"SAS0675;SAS0676;SAS0677";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"861019-861122";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"861210-862236";i:10;s:1:"+";i:11;s:7:"SAS0779";i:12;s:45:"Methionine import ATP-binding protein MetN 2 ";i:13;s:7:"SAS0779";i:14;s:6:"Operon";i:15;s:5:"35193";i:16;s:23:"SAS0779;SAS0780;SAS0781";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"902501-902591";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"903596-903974";i:10;s:1:"+";i:11;s:7:"SAS0825";i:12;s:0:"";i:13;s:7:"SAS0825";i:14;s:11:"Single gene";i:15;s:7:"1440481";i:16;s:7:"SAS0825";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"979834-979940";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"980015-980819";i:10;s:1:"+";i:11;s:7:"SAS0890";i:12;s:0:"";i:13;s:7:"SAS0890";i:14;s:11:"Single gene";i:15;s:7:"1440504";i:16;s:7:"SAS0890";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1086334-1086434";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1085681-1086257";i:10;s:1:"-";i:11;s:7:"SAS1013";i:12;s:0:"";i:13;s:7:"SAS1013";i:14;s:6:"Operon";i:15;s:5:"35234";i:16;s:23:"SAS1011;SAS1012;SAS1013";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1429786-1429961";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1430042-1431248";i:10;s:1:"+";i:11;s:7:"SAS1334";i:12;s:0:"";i:13;s:7:"SAS1334";i:14;s:6:"Operon";i:15;s:5:"35295";i:16;s:45:"SAS1334;SAS1335;SAS1336(dapA);SAS1337;SAS1338";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1551305-1551439";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1550697-1551243";i:10;s:1:"-";i:11;s:7:"SAS1425";i:12;s:0:"";i:13;s:7:"SAS1425";i:14;s:11:"Single gene";i:15;s:7:"1440698";i:16;s:7:"SAS1425";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1602168-1602265";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1601001-1602093";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:7:"SAS1475";i:14;s:6:"Operon";i:15;s:5:"35330";i:16;s:29:"SAS1473;SAS1474;SAS1475(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1732415-1732590";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1730776-1732270";i:10;s:1:"-";i:11;s:7:"SAS1610";i:12;s:0:"";i:13;s:7:"SAS1610";i:14;s:11:"Single gene";i:15;s:7:"1440738";i:16;s:7:"SAS1610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1845588-1845723";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1844417-1845461";i:10;s:1:"-";i:11;s:7:"SAS1694";i:12;s:0:"";i:13;s:7:"SAS1694";i:14;s:6:"Operon";i:15;s:5:"35376";i:16;s:37:"SAS1691(ribH);SAS1692;SAS1693;SAS1694";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1860045-1860156";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1858745-1859939";i:10;s:1:"-";i:11;s:7:"SAS1711";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:7:"SAS1711";i:14;s:11:"Single gene";i:15;s:7:"1440792";i:16;s:7:"SAS1711";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2155664-2155766";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2154894-2155584";i:10;s:1:"-";i:11;s:7:"SAS1998";i:12;s:47:"Aminopyrimidine aminohydrolase (Thiaminase II)";i:13;s:7:"SAS1998";i:14;s:6:"Operon";i:15;s:5:"35443";i:16;s:37:"SAS1995(thiE);SAS1996;SAS1997;SAS1998";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2211132-2211348";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2209124-2210930";i:10;s:1:"-";i:11;s:7:"SAS2055";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:7:"SAS2055";i:14;s:11:"Single gene";i:15;s:7:"1440919";i:16;s:7:"SAS2055";i:17;s:99:"carbohydrate derivative biosynthetic process [GO:1901137]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_002953.3";i:2;s:44:"Staphylococcus aureus subsp. aureus MSSA476 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2372869-2372964";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2371478-2372858";i:10;s:1:"-";i:11;s:7:"SAS2219";i:12;s:0:"";i:13;s:7:"SAS2219";i:14;s:11:"Single gene";i:15;s:7:"1440986";i:16;s:7:"SAS2219";i:17;s:0:"";i:18;s:15:"View Structure ";}}