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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15939-16037
(+)
SAM
16095-17064 (+)
SAR0012
SAR0012
Single gene
DOOR ID:
1439040
SAR0012
View Structure
2
441050-441152
(+)
purine
441382-441961 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
SAR0406
Operon
DOOR ID:
34607
SAR0406
(xpt)
,
SAR0407
(pbuX)
,
SAR0408
(guaB)
,
SAR0409
(guaA)
View Structure
3
800084-800130
(-)
PreQ1
799245-799914 (-)
SAR0765
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SAR0765
Operon
DOOR ID:
34677
SAR0763,
SAR0764,
SAR0765
View Structure
4
908405-908508
(+)
SAM
908596-909622 (+)
SAR0870
Methionine import ATP-binding protein MetN 2
SAR0870
Operon
DOOR ID:
34696
SAR0870,
SAR0871,
SAR0872
View Structure
5
950492-950582
(+)
preQ1-II
951587-951965 (+)
SAR0917
SAR0917
Single gene
DOOR ID:
1439404
SAR0917
View Structure
6
1036419-1036525
(+)
yybP-ykoY
1036600-1037404 (+)
SAR0991
SAR0991
Single gene
DOOR ID:
1439433
SAR0991
View Structure
7
1098190-1098290
(-)
TPP
1097537-1098113 (-)
SAR1051
SAR1051
Operon
DOOR ID:
34729
SAR1049,
SAR1050,
SAR1051
View Structure
8
1463346-1463521
(+)
lysine
1463602-1464808 (+)
lysC
SAR1405
Operon
DOOR ID:
34798
SAR1405
(lysC)
,
SAR1406
(asd)
,
SAR1407
(dapA)
,
SAR1408
(dapB)
,
SAR1409
(dapD)
View Structure
9
1588874-1589008
(-)
FMN
1588266-1588812 (-)
SAR1493
SAR1493
Single gene
DOOR ID:
1439621
SAR1493
View Structure
10
1687634-1687731
(-)
glycine
1686467-1687559 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SAR1614
Operon
DOOR ID:
34841
SAR1612,
SAR1613,
SAR1614
(gcvT)
View Structure
11
1824382-1824557
(-)
lysine
1822742-1824236 (-)
lysP
SAR1761
Single gene
DOOR ID:
1439677
SAR1761
(lysP)
View Structure
12
1943687-1943822
(-)
FMN
1942516-1943560 (-)
ribD
SAR1853
Operon
DOOR ID:
34889
SAR1850
(ribH)
,
SAR1851
(ribA)
,
SAR1852
(ribE)
,
SAR1853
(ribD)
View Structure
13
1958937-1959048
(-)
SAM
1957637-1958831 (-)
SAR1870
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SAR1870
Single gene
DOOR ID:
1439731
SAR1870
View Structure
14
2253957-2254059
(-)
TPP
2253187-2253877 (-)
tenA
Aminopyrimidine aminohydrolase (Thiaminase II)
SAR2183
Operon
DOOR ID:
34954
SAR2180
(thiE)
,
SAR2181
(thiM)
,
SAR2182
(thiD)
,
SAR2183
(tenA)
View Structure
15
2311657-2311873
(-)
glmS
2309649-2311455 (-)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
SAR2242
Single gene
DOOR ID:
1439862
SAR2242
(glmS)
View Structure
16
2480682-2480777
(-)
SAM
2479294-2480671 (-)
SAR2411
SAR2411
Single gene
DOOR ID:
1439931
SAR2411
View Structure
Genome:
Staphylococcus aureus subsp. aureus MRSA252
(
NC_002952.2
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15939-16037";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16095-17064";i:10;s:1:"+";i:11;s:7:"SAR0012";i:12;s:0:"";i:13;s:7:"SAR0012";i:14;s:11:"Single gene";i:15;s:7:"1439040";i:16;s:7:"SAR0012";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"441050-441152";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"441382-441961";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:7:"SAR0406";i:14;s:6:"Operon";i:15;s:5:"34607";i:16;s:54:"SAR0406(xpt);SAR0407(pbuX);SAR0408(guaB);SAR0409(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"800084-800130";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"799245-799914";i:10;s:1:"-";i:11;s:7:"SAR0765";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:7:"SAR0765";i:14;s:6:"Operon";i:15;s:5:"34677";i:16;s:23:"SAR0763;SAR0764;SAR0765";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"908405-908508";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"908596-909622";i:10;s:1:"+";i:11;s:7:"SAR0870";i:12;s:45:"Methionine import ATP-binding protein MetN 2 ";i:13;s:7:"SAR0870";i:14;s:6:"Operon";i:15;s:5:"34696";i:16;s:23:"SAR0870;SAR0871;SAR0872";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"950492-950582";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"951587-951965";i:10;s:1:"+";i:11;s:7:"SAR0917";i:12;s:0:"";i:13;s:7:"SAR0917";i:14;s:11:"Single gene";i:15;s:7:"1439404";i:16;s:7:"SAR0917";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1036419-1036525";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1036600-1037404";i:10;s:1:"+";i:11;s:7:"SAR0991";i:12;s:0:"";i:13;s:7:"SAR0991";i:14;s:11:"Single gene";i:15;s:7:"1439433";i:16;s:7:"SAR0991";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1098190-1098290";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1097537-1098113";i:10;s:1:"-";i:11;s:7:"SAR1051";i:12;s:0:"";i:13;s:7:"SAR1051";i:14;s:6:"Operon";i:15;s:5:"34729";i:16;s:23:"SAR1049;SAR1050;SAR1051";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1463346-1463521";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1463602-1464808";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:7:"SAR1405";i:14;s:6:"Operon";i:15;s:5:"34798";i:16;s:68:"SAR1405(lysC);SAR1406(asd);SAR1407(dapA);SAR1408(dapB);SAR1409(dapD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1588874-1589008";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1588266-1588812";i:10;s:1:"-";i:11;s:7:"SAR1493";i:12;s:0:"";i:13;s:7:"SAR1493";i:14;s:11:"Single gene";i:15;s:7:"1439621";i:16;s:7:"SAR1493";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1687634-1687731";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1686467-1687559";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:7:"SAR1614";i:14;s:6:"Operon";i:15;s:5:"34841";i:16;s:29:"SAR1612;SAR1613;SAR1614(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1824382-1824557";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1822742-1824236";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:7:"SAR1761";i:14;s:11:"Single gene";i:15;s:7:"1439677";i:16;s:13:"SAR1761(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1943687-1943822";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1942516-1943560";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:7:"SAR1853";i:14;s:6:"Operon";i:15;s:5:"34889";i:16;s:55:"SAR1850(ribH);SAR1851(ribA);SAR1852(ribE);SAR1853(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1958937-1959048";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1957637-1958831";i:10;s:1:"-";i:11;s:7:"SAR1870";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:7:"SAR1870";i:14;s:11:"Single gene";i:15;s:7:"1439731";i:16;s:7:"SAR1870";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2253957-2254059";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2253187-2253877";i:10;s:1:"-";i:11;s:4:"tenA";i:12;s:47:"Aminopyrimidine aminohydrolase (Thiaminase II)";i:13;s:7:"SAR2183";i:14;s:6:"Operon";i:15;s:5:"34954";i:16;s:55:"SAR2180(thiE);SAR2181(thiM);SAR2182(thiD);SAR2183(tenA)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2311657-2311873";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2309649-2311455";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:7:"SAR2242";i:14;s:11:"Single gene";i:15;s:7:"1439862";i:16;s:13:"SAR2242(glmS)";i:17;s:99:"carbohydrate derivative biosynthetic process [GO:1901137]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_002952.2";i:2;s:44:"Staphylococcus aureus subsp. aureus MRSA252 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2480682-2480777";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2479294-2480671";i:10;s:1:"-";i:11;s:7:"SAR2411";i:12;s:0:"";i:13;s:7:"SAR2411";i:14;s:11:"Single gene";i:15;s:7:"1439931";i:16;s:7:"SAR2411";i:17;s:0:"";i:18;s:15:"View Structure ";}}