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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15975-16073
(+)
SAM
16111-17101 (+)
SACOL0012
Homoserine O-acetyltransferase; putative
SACOL0012
Single gene
DOOR ID:
1438404
SACOL0012
View Structure
2
460059-460161
(+)
purine
460391-460970 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
SACOL0458
Operon
DOOR ID:
34108
SACOL0458
(xpt)
,
SACOL0459
(pbuX)
,
SACOL0460
(guaB)
,
SACOL0461
(guaA)
View Structure
3
793641-793687
(-)
PreQ1
792802-793471 (-)
SACOL0772
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SACOL0772
Operon
DOOR ID:
34174
SACOL0770,
SACOL0771,
SACOL0772
View Structure
4
900604-900707
(+)
SAM
900795-901821 (+)
SACOL0882
Methionine import ATP-binding protein MetN 2
SACOL0882
Operon
DOOR ID:
34194
SACOL0882,
SACOL0883,
SACOL0884
View Structure
5
958058-958148
(+)
preQ1-II
959154-959532 (+)
SACOL0958
General stress protein 13
SACOL0958
Single gene
DOOR ID:
1438607
SACOL0958
View Structure
6
1035500-1035606
(+)
yybP-ykoY
1035681-1036485 (+)
SACOL1026
SACOL1026
Single gene
DOOR ID:
1438015
SACOL1026
View Structure
7
1097287-1097387
(-)
TPP
1096634-1097210 (-)
SACOL1086
SACOL1086
Operon
DOOR ID:
34234
SACOL1084,
SACOL1085,
SACOL1086
View Structure
8
1440344-1440519
(+)
lysine
1440600-1441806 (+)
lysC
Aspartokinase
SACOL1428
Operon
DOOR ID:
34298
SACOL1428
(lysC)
,
SACOL1429
(asd)
,
SACOL1430
(dapA)
,
SACOL1431
(dapB)
,
SACOL1432
(dapD)
View Structure
9
1565357-1565491
(-)
FMN
1564749-1565295 (-)
SACOL1526
Riboflavin transporter
SACOL1526
Single gene
DOOR ID:
1438123
SACOL1526
View Structure
10
1629944-1630041
(-)
glycine
1628777-1629869 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SACOL1595
Operon
DOOR ID:
34338
SACOL1593,
SACOL1594,
SACOL1595
(gcvT)
View Structure
11
1759435-1759610
(-)
lysine
1757796-1759290 (-)
SACOL1728
Amino acid permease
SACOL1728
Single gene
DOOR ID:
1438148
SACOL1728
View Structure
12
1876087-1876222
(-)
FMN
1874916-1875960 (-)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
SACOL1820
Operon
DOOR ID:
34384
SACOL1817
(ribH)
,
SACOL1818
(ribBA)
,
SACOL1819
(ribE)
,
SACOL1820
(ribD)
View Structure
13
1892866-1892976
(-)
SAM
1891566-1892760 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SACOL1837
Single gene
DOOR ID:
1438154
SACOL1837
(metK)
View Structure
14
2151592-2151694
(-)
TPP
2150822-2151512 (-)
SACOL2086
Aminopyrimidine aminohydrolase (Thiaminase II)
SACOL2086
Operon
DOOR ID:
34436
SACOL2083
(thiE)
,
SACOL2084
(thiM)
,
SACOL2085
(thiD2)
,
SACOL2086
View Structure
15
2208334-2208550
(-)
glmS
2206326-2208132 (-)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
SACOL2145
Single gene
DOOR ID:
1438802
SACOL2145
(glmS)
View Structure
16
2380907-2381002
(-)
SAM
2379516-2380830 (-)
SACOL2319
Na+/H+ antiporter family protein
SACOL2319
Single gene
DOOR ID:
1438270
SACOL2319
View Structure
Genome:
Staphylococcus aureus subsp. aureus COL
(
NC_002951.2
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15975-16073";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16111-17101";i:10;s:1:"+";i:11;s:9:"SACOL0012";i:12;s:40:"Homoserine O-acetyltransferase; putative";i:13;s:9:"SACOL0012";i:14;s:11:"Single gene";i:15;s:7:"1438404";i:16;s:9:"SACOL0012";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"460059-460161";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"460391-460970";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"SACOL0458";i:14;s:6:"Operon";i:15;s:5:"34108";i:16;s:62:"SACOL0458(xpt);SACOL0459(pbuX);SACOL0460(guaB);SACOL0461(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"793641-793687";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"792802-793471";i:10;s:1:"-";i:11;s:9:"SACOL0772";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:9:"SACOL0772";i:14;s:6:"Operon";i:15;s:5:"34174";i:16;s:29:"SACOL0770;SACOL0771;SACOL0772";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"900604-900707";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"900795-901821";i:10;s:1:"+";i:11;s:9:"SACOL0882";i:12;s:45:"Methionine import ATP-binding protein MetN 2 ";i:13;s:9:"SACOL0882";i:14;s:6:"Operon";i:15;s:5:"34194";i:16;s:29:"SACOL0882;SACOL0883;SACOL0884";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"958058-958148";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"959154-959532";i:10;s:1:"+";i:11;s:9:"SACOL0958";i:12;s:25:"General stress protein 13";i:13;s:9:"SACOL0958";i:14;s:11:"Single gene";i:15;s:7:"1438607";i:16;s:9:"SACOL0958";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1035500-1035606";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1035681-1036485";i:10;s:1:"+";i:11;s:9:"SACOL1026";i:12;s:0:"";i:13;s:9:"SACOL1026";i:14;s:11:"Single gene";i:15;s:7:"1438015";i:16;s:9:"SACOL1026";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1097287-1097387";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1096634-1097210";i:10;s:1:"-";i:11;s:9:"SACOL1086";i:12;s:0:"";i:13;s:9:"SACOL1086";i:14;s:6:"Operon";i:15;s:5:"34234";i:16;s:29:"SACOL1084;SACOL1085;SACOL1086";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1440344-1440519";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1440600-1441806";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"SACOL1428";i:14;s:6:"Operon";i:15;s:5:"34298";i:16;s:78:"SACOL1428(lysC);SACOL1429(asd);SACOL1430(dapA);SACOL1431(dapB);SACOL1432(dapD)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1565357-1565491";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1564749-1565295";i:10;s:1:"-";i:11;s:9:"SACOL1526";i:12;s:22:"Riboflavin transporter";i:13;s:9:"SACOL1526";i:14;s:11:"Single gene";i:15;s:7:"1438123";i:16;s:9:"SACOL1526";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1629944-1630041";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1628777-1629869";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:9:"SACOL1595";i:14;s:6:"Operon";i:15;s:5:"34338";i:16;s:35:"SACOL1593;SACOL1594;SACOL1595(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1759435-1759610";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1757796-1759290";i:10;s:1:"-";i:11;s:9:"SACOL1728";i:12;s:19:"Amino acid permease";i:13;s:9:"SACOL1728";i:14;s:11:"Single gene";i:15;s:7:"1438148";i:16;s:9:"SACOL1728";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1876087-1876222";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1874916-1875960";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"SACOL1820";i:14;s:6:"Operon";i:15;s:5:"34384";i:16;s:64:"SACOL1817(ribH);SACOL1818(ribBA);SACOL1819(ribE);SACOL1820(ribD)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1892866-1892976";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1891566-1892760";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"SACOL1837";i:14;s:11:"Single gene";i:15;s:7:"1438154";i:16;s:15:"SACOL1837(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2151592-2151694";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2150822-2151512";i:10;s:1:"-";i:11;s:9:"SACOL2086";i:12;s:47:"Aminopyrimidine aminohydrolase (Thiaminase II)";i:13;s:9:"SACOL2086";i:14;s:6:"Operon";i:15;s:5:"34436";i:16;s:58:"SACOL2083(thiE);SACOL2084(thiM);SACOL2085(thiD2);SACOL2086";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2208334-2208550";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2206326-2208132";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"SACOL2145";i:14;s:11:"Single gene";i:15;s:7:"1438802";i:16;s:15:"SACOL2145(glmS)";i:17;s:99:"carbohydrate derivative biosynthetic process [GO:1901137]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_002951.2";i:2;s:40:"Staphylococcus aureus subsp. aureus COL ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2380907-2381002";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2379516-2380830";i:10;s:1:"-";i:11;s:9:"SACOL2319";i:12;s:32:"Na+/H+ antiporter family protein";i:13;s:9:"SACOL2319";i:14;s:11:"Single gene";i:15;s:7:"1438270";i:16;s:9:"SACOL2319";i:17;s:0:"";i:18;s:15:"View Structure ";}}