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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
197795-197871
(-)
c-di-GMP-I
196421-197729 (-)
GSU0183
Peptidoglycan L;D-transpeptidase lipoprotein; YkuD family; SPOR domain-containing
GSU0183
single gene
DOOR ID:
1428475
GSU0183
View Structure
2
197994-198070
(-)
c-di-GMP-I
196421-197729 (-)
GSU0183
Peptidoglycan L;D-transpeptidase lipoprotein; YkuD family; SPOR domain-containing
GSU0183
single gene
DOOR ID:
1428475
GSU0183
View Structure
3
622572-622724
(-)
TPP
622300-622498 (-)
thiS
Thiamin biosynthesis sulfur carrier protein
GSU0589
Operon
DOOR ID:
28741
GSU0585,
GSU0586,
GSU0587
(thiE)
,
GSU0588
(thiG)
,
GSU0589
View Structure
4
640824-640925
(-)
TPP
639284-640757 (-)
thiE%2FthiD
Thiamine biosynthesis bifunctional protein ThiED [Includes: Thiamine-phosphate synthase (TMP-PPase) (TP synthase) (TPS) (Hydroxymethylpyrimidine kinase) (HMP kinase) (Hydroxymethylpyrimidine phosphate kinase) (HMP-P kinase) (HMP-phosphate kinase) (HMPP kinase)]
GSU0605
Operon
DOOR ID:
28746
GSU0604
(thiC-1)
,
GSU0605
View Structure
5
755397-755441
(-)
mini-ykkC
755053-755374 (-)
sugE
GSU0707
Operon
DOOR ID:
28767
GSU0706,
GSU0707
(sugE)
,
GSU0708
View Structure
6
1014094-1014200
(+)
SAM
1014274-1015408 (+)
metC-1
Cystathionine gamma-synthase/beta-lyase
GSU0944
Operon
DOOR ID:
28818
GSU0944
(metC-1)
,
GSU0945
(metC-2)
View Structure
7
1081541-1081617
(+)
c-di-GMP-I
1081680-1082064 (+)
GSU1001
Uncharacterized protein
GSU1001
single gene
DOOR ID:
1428755
GSU1001
View Structure
8
1100058-1100141
(-)
c-di-GMP-I
1099427-1099979 (-)
GSU1018
Uncharacterized protein
GSU1018
single gene
DOOR ID:
1428761
GSU1018
View Structure
9
1146959-1147035
(-)
c-di-GMP-I
1146043-1146895 (-)
GSU1060
Uncharacterized protein
GSU1060
single gene
DOOR ID:
1428779
GSU1060
View Structure
10
1348996-1349071
(+)
c-di-GMP-I
1349161-1349728 (+)
GSU1247
Uncharacterized protein
GSU1247
single gene
DOOR ID:
1428837
GSU1247
View Structure
11
1711354-1711430
(-)
c-di-GMP-I
1710351-1711281 (-)
GSU1556
Lipoprotein; putative
GSU1556
single gene
DOOR ID:
1428927
GSU1556
View Structure
12
1922651-1922726
(+)
c-di-GMP-I
1922820-1924356 (+)
pgcA
Lipoprotein cytochrome c
GSU1761
single gene
DOOR ID:
1428994
GSU1761
View Structure
13
2133335-2133425
(-)
c-di-GMP-I
2130062-2133206 (-)
GSU1945
Repeat-containing protein
GSU1945
single gene
DOOR ID:
1429050
GSU1945
View Structure
14
2133615-2133691
(-)
c-di-GMP-I
2130062-2133206 (-)
GSU1945
Repeat-containing protein
GSU1945
single gene
DOOR ID:
1429050
GSU1945
View Structure
15
2136072-2136163
(-)
c-di-GMP-I
2134870-2135950 (-)
GSU1948
Uncharacterized protein
GSU1948
operon
DOOR ID:
29033
GSU1947,
GSU1948
View Structure
16
2136297-2136373
(-)
c-di-GMP-I
2134870-2135950 (-)
GSU1948
Uncharacterized protein
GSU1948
operon
DOOR ID:
29033
GSU1947,
GSU1948
View Structure
17
2225914-2225990
(-)
c-di-GMP-I
2225466-2225667 (-)
GSU2033
Helix-turn-helix transcriptional regulator; XRE family
GSU2033
single gene
DOOR ID:
1429069
GSU2033
View Structure
18
2700113-2700215
(+)
SAM
2700310-2701417 (+)
metX
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
GSU2462
Single gene
DOOR ID:
1429201
GSU2462
View Structure
19
2728249-2728388
(+)
ydaO-yuaA
2728470-2730288 (+)
GSU2485
Probable potassium transport system protein kup 2
GSU2485
Single gene
DOOR ID:
1429210
GSU2485
View Structure
20
2759975-2760055
(-)
c-di-GMP-I
2758650-2759949 (-)
omcS
C-type cytochrome OmcS (Outer membrane cytochrome S)
GSU2504
single gene
DOOR ID:
1429216
GSU2504
View Structure
21
2773384-2773460
(+)
c-di-GMP-I
2773609-2774035 (+)
GSU2515
Cytochrome c; 1 heme-binding site
GSU2515
single gene
DOOR ID:
1429223
GSU2515
View Structure
22
2979270-2979388
(+)
MOCO
2979460-2979844 (+)
moaE
Molybdopterin synthase; large subunit
GSU2699
Operon
DOOR ID:
29191
GSU2699,
GSU2700,
GSU2701,
GSU2702,
GSU2703
(moeA)
,
GSU2704
(moaC)
,
GSU2705
(moaB)
View Structure
23
3168882-3168956
(-)
c-di-GMP-I
3166128-3168795 (-)
GSU2885
NHL repeat domain protein
GSU2885
operon
DOOR ID:
29219
GSU2884,
GSU2885
View Structure
24
3169067-3169141
(-)
c-di-GMP-I
3166128-3168795 (-)
GSU2885
NHL repeat domain protein
GSU2885
operon
DOOR ID:
29219
GSU2884,
GSU2885
View Structure
25
3296923-3297122
(-)
cobalamin
3295762-3296803 (-)
cbiMN
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
GSU3004
Single gene
DOOR ID:
1428408
GSU3004
View Structure
26
3302970-3303195
(-)
cobalamin
3302363-3302882 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
GSU3010
Operon
DOOR ID:
29250
GSU3008
(cobS)
,
GSU3009
(cobT)
,
GSU3010
(cobU)
View Structure
Genome:
Geobacter sulfurreducens PCA
(
NC_002939.5
);
Phylum:
delta/epsilon subdivisions
a:27:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"197795-197871";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:13:"196421-197729";i:10;s:1:"-";i:11;s:7:"GSU0183";i:12;s:81:"Peptidoglycan L;D-transpeptidase lipoprotein; YkuD family; SPOR domain-containing";i:13;s:7:"GSU0183";i:14;s:11:"single gene";i:15;s:7:"1428475";i:16;s:7:"GSU0183";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"197994-198070";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:13:"196421-197729";i:10;s:1:"-";i:11;s:7:"GSU0183";i:12;s:81:"Peptidoglycan L;D-transpeptidase lipoprotein; YkuD family; SPOR domain-containing";i:13;s:7:"GSU0183";i:14;s:11:"single gene";i:15;s:7:"1428475";i:16;s:7:"GSU0183";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"622572-622724";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"622300-622498";i:10;s:1:"-";i:11;s:4:"thiS";i:12;s:43:"Thiamin biosynthesis sulfur carrier protein";i:13;s:7:"GSU0589";i:14;s:6:"Operon";i:15;s:5:"28741";i:16;s:51:"GSU0585;GSU0586;GSU0587(thiE);GSU0588(thiG);GSU0589";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"640824-640925";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"639284-640757";i:10;s:1:"-";i:11;s:11:"thiE%2FthiD";i:12;s:262:"Thiamine biosynthesis bifunctional protein ThiED [Includes: Thiamine-phosphate synthase (TMP-PPase) (TP synthase) (TPS) (Hydroxymethylpyrimidine kinase) (HMP kinase) (Hydroxymethylpyrimidine phosphate kinase) (HMP-P kinase) (HMP-phosphate kinase) (HMPP kinase)]";i:13;s:7:"GSU0605";i:14;s:6:"Operon";i:15;s:5:"28746";i:16;s:23:"GSU0604(thiC-1);GSU0605";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:13:"755397-755441";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"755053-755374";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:7:"GSU0707";i:14;s:6:"Operon";i:15;s:5:"28767";i:16;s:29:"GSU0706;GSU0707(sugE);GSU0708";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1014094-1014200";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1014274-1015408";i:10;s:1:"+";i:11;s:6:"metC-1";i:12;s:39:"Cystathionine gamma-synthase/beta-lyase";i:13;s:7:"GSU0944";i:14;s:6:"Operon";i:15;s:5:"28818";i:16;s:31:"GSU0944(metC-1);GSU0945(metC-2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1081541-1081617";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1081680-1082064";i:10;s:1:"+";i:11;s:7:"GSU1001";i:12;s:23:"Uncharacterized protein";i:13;s:7:"GSU1001";i:14;s:11:"single gene";i:15;s:7:"1428755";i:16;s:7:"GSU1001";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1100058-1100141";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1099427-1099979";i:10;s:1:"-";i:11;s:7:"GSU1018";i:12;s:23:"Uncharacterized protein";i:13;s:7:"GSU1018";i:14;s:11:"single gene";i:15;s:7:"1428761";i:16;s:7:"GSU1018";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1146959-1147035";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1146043-1146895";i:10;s:1:"-";i:11;s:7:"GSU1060";i:12;s:23:"Uncharacterized protein";i:13;s:7:"GSU1060";i:14;s:11:"single gene";i:15;s:7:"1428779";i:16;s:7:"GSU1060";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1348996-1349071";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1349161-1349728";i:10;s:1:"+";i:11;s:7:"GSU1247";i:12;s:23:"Uncharacterized protein";i:13;s:7:"GSU1247";i:14;s:11:"single gene";i:15;s:7:"1428837";i:16;s:7:"GSU1247";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1711354-1711430";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1710351-1711281";i:10;s:1:"-";i:11;s:7:"GSU1556";i:12;s:21:"Lipoprotein; putative";i:13;s:7:"GSU1556";i:14;s:11:"single gene";i:15;s:7:"1428927";i:16;s:7:"GSU1556";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"1922651-1922726";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"1922820-1924356";i:10;s:1:"+";i:11;s:4:"pgcA";i:12;s:24:"Lipoprotein cytochrome c";i:13;s:7:"GSU1761";i:14;s:11:"single gene";i:15;s:7:"1428994";i:16;s:7:"GSU1761";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2133335-2133425";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"2130062-2133206";i:10;s:1:"-";i:11;s:7:"GSU1945";i:12;s:25:"Repeat-containing protein";i:13;s:7:"GSU1945";i:14;s:11:"single gene";i:15;s:7:"1429050";i:16;s:7:"GSU1945";i:17;s:45:"polysaccharide catabolic process [GO:0000272]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2133615-2133691";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"2130062-2133206";i:10;s:1:"-";i:11;s:7:"GSU1945";i:12;s:25:"Repeat-containing protein";i:13;s:7:"GSU1945";i:14;s:11:"single gene";i:15;s:7:"1429050";i:16;s:7:"GSU1945";i:17;s:45:"polysaccharide catabolic process [GO:0000272]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2136072-2136163";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"2134870-2135950";i:10;s:1:"-";i:11;s:7:"GSU1948";i:12;s:23:"Uncharacterized protein";i:13;s:7:"GSU1948";i:14;s:6:"operon";i:15;s:5:"29033";i:16;s:15:"GSU1947;GSU1948";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2136297-2136373";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"2134870-2135950";i:10;s:1:"-";i:11;s:7:"GSU1948";i:12;s:23:"Uncharacterized protein";i:13;s:7:"GSU1948";i:14;s:6:"operon";i:15;s:5:"29033";i:16;s:15:"GSU1947;GSU1948";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_002939.5";i:2;s:29:"Geobacter sulfurreducens PCA ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"2225914-2225990";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"2225466-2225667";i:10;s:1:"-";i:11;s:7:"GSU2033";i:12;s:54:"Helix-turn-helix transcriptional regulator; 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