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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
721630-721811
(-)
cobalamin
720600-721494 (-)
DVU0650
DVU0650
Operon
DOOR ID:
28059
DVU0646
(cobI)
,
DVU0647,
DVU0648,
DVU0649,
DVU0650
View Structure
2
808071-808166
(-)
glycine
806522-807929 (-)
DVU0724
DVU0724
Single gene
DOOR ID:
1427435
DVU0724
View Structure
3
1264199-1264320
(-)
SAM
1263964-1264060 (+)
DVU1171
DVU1171
Single gene
DOOR ID:
1427583
DVU1171
View Structure
4
1840631-1840778
(-)
FMN
1839891-1840536 (-)
ribB
DVU1775
Single gene
DOOR ID:
1427764
DVU1775
(ribB)
View Structure
5
2184604-2184704
(-)
TPP
2184247-2184448 (-)
thiS
DVU2095
Operon
DOOR ID:
28358
DVU2092,
DVU2093
(thiH)
,
DVU2094
(thiG)
,
DVU2095
(thiS)
View Structure
6
2184770-2184870
(-)
TPP
2184247-2184448 (-)
thiS
DVU2095
Operon
DOOR ID:
28358
DVU2092,
DVU2093
(thiH)
,
DVU2094
(thiG)
,
DVU2095
(thiS)
View Structure
7
3052969-3053145
(-)
cobalamin
3050746-3052816 (-)
DVU2947
DVU2947
Single gene
DOOR ID:
1428203
DVU2947
View Structure
8
3544551-3544783
(-)
cobalamin
3542096-3544454 (-)
metE
DVU3371
Single gene
DOOR ID:
1428373
DVU3371
(metE)
View Structure
Genome:
Desulfovibrio vulgaris str. Hildenborough
(
NC_002937.3
);
Phylum:
delta/epsilon subdivisions
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