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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
48078-48158
(+)
sam-alpha
49391-50006 (+)
metX
BP0048
Operon
DOOR ID:
25913
BP0047
(metX)
,
BP0048
View Structure
2
197088-197180
(+)
glycine
197401-198502 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BP0195
Operon
DOOR ID:
25940
BP0195
(gcvT)
,
BP0196
(gcvH)
,
BP0197
(gcvP)
View Structure
3
197202-197321
(+)
glycine
197401-198502 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BP0195
Operon
DOOR ID:
25940
BP0195
(gcvT)
,
BP0196
(gcvH)
,
BP0197
(gcvP)
View Structure
4
209596-209707
(+)
TPP
209770-211684 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BP0206
Single gene
DOOR ID:
1423672
BP0206
(thiC)
View Structure
5
481881-482034
(+)
FMN
482144-482837 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BP0471
Single gene
DOOR ID:
1423771
BP0471
(ribB)
View Structure
6
3271127-3271247
(-)
SAH
3269606-3271025 (-)
acyH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BP3068
Single gene
DOOR ID:
1424644
BP3068
(acyH)
View Structure
7
3619234-3619427
(-)
yybP-ykoY
3618152-3619190 (-)
BP3410
Putative inner membrane protein
BP3410
Single gene
DOOR ID:
1424751
BP3410
View Structure
8
3811547-3811706
(+)
cobalamin
3811777-3813667 (+)
BP3595
Putative outer membrane protein
BP3595
Operon
DOOR ID:
26583
BP3595,
BP3596,
BP3597
(thiG)
,
BP3598
(thiD)
,
BP3599
View Structure
Genome:
Bordetella pertussis Tohama I
(
NC_002929.2
);
Phylum:
Betaproteobacteria
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