About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
203880-204000
(+)
SAH
204101-205520 (+)
acyH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BB0198
Operon
DOOR ID:
9484
BB0196
(prfA)
,
BB0197,
BB0198,
BB0199
View Structure
2
309158-309269
(-)
TPP
307180-309094 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BB0304
Operon
DOOR ID:
9503
BB0264,
BB0265,
BB0266,
BB0267,
BB0268,
BB0269,
BB0270,
BB0271
(flhA)
,
BB0272
(flhB)
,
BB0273,
BB0274,
BB0275
(fliP)
,
BB0276,
BB0277,
BB0278
(fliM)
,
BB0279
(fliL)
,
BB0280
(motB)
,
BB0281,
BB0282,
BB0283
(flgE)
,
BB0284
(flgD)
,
BB0285,
BB0286,
BB0287,
BB0288,
BB0289
(fliH)
,
BB0290
(fliG)
,
BB0291
(fliF)
,
BB0292
(fliE)
,
BB0293
(flgC)
,
BB0294
(flgB)
,
BB0295
(hslU)
,
BB0296,
BB0297,
BB0298,
BB0299,
BB0300,
BB0301,
BB0302,
BB0303
(mraY)
,
BB0304,
BB0305,
BB0306,
BB0307,
BB0308,
BB0309
View Structure
3
862225-862269
(+)
mini-ykkC
862282-863449 (+)
BB0819
BB0819
Operon
DOOR ID:
9604
BB0814
(panF)
,
BB0815,
BB0816,
BB0817
(murC)
,
BB0818,
BB0819,
BB0820,
BB0821
(miaA)
,
BB0822
View Structure
4
901485-901577
(+)
glycine
901798-902899 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BB0854
Single gene
DOOR ID:
1421115
BB0854
(gcvT)
View Structure
5
901599-901718
(+)
glycine
901798-902899 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BB0854
Single gene
DOOR ID:
1421115
BB0854
(gcvT)
View Structure
6
2944505-2944593
(-)
glycine
2943133-2944345 (-)
dadA3
D-amino acid dehydrogenase small subunit
BB2777
Single gene
DOOR ID:
1421651
BB2777
(dadA3)
View Structure
7
4245362-4245555
(-)
yybP-ykoY
4244310-4245318 (-)
BB3995
Putative Ca2+/Na+ antiporter
BB3995
Single gene
DOOR ID:
1421993
BB3995
View Structure
8
4752631-4752790
(+)
cobalamin
4752861-4754751 (+)
BB4457
Putative outer membrane protein
BB4457
Operon
DOOR ID:
24886
BB4457,
BB4458,
BB4459
(thiG)
,
BB4460
(thiD)
,
BB4461,
BB4462
View Structure
9
4852801-4852881
(-)
sam-alpha
4850952-4851567 (-)
BB4553
BB4553
Operon
DOOR ID:
24907
BB4553,
BB4554
(metX)
View Structure
10
5289498-5289651
(+)
FMN
5289761-5290454 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BB4971
Single gene
DOOR ID:
1422271
BB4971
(ribB)
View Structure
Genome:
Bordetella bronchiseptica RB50
(
NC_002927.3
);
Phylum:
Betaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"203880-204000";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"204101-205520";i:10;s:1:"+";i:11;s:4:"acyH";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:6:"BB0198";i:14;s:6:"Operon";i:15;s:4:"9484";i:16;s:33:"BB0196(prfA);BB0197;BB0198;BB0199";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"309158-309269";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"307180-309094";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:6:"BB0304";i:14;s:6:"Operon";i:15;s:4:"9503";i:16;s:417:"BB0264;BB0265;BB0266;BB0267;BB0268;BB0269;BB0270;BB0271(flhA);BB0272(flhB);BB0273;BB0274;BB0275(fliP);BB0276;BB0277;BB0278(fliM);BB0279(fliL);BB0280(motB);BB0281;BB0282;BB0283(flgE);BB0284(flgD);BB0285;BB0286;BB0287;BB0288;BB0289(fliH);BB0290(fliG);BB0291(fliF);BB0292(fliE);BB0293(flgC);BB0294(flgB);BB0295(hslU);BB0296;BB0297;BB0298;BB0299;BB0300;BB0301;BB0302;BB0303(mraY);BB0304;BB0305;BB0306;BB0307;BB0308;BB0309";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"862225-862269";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:13:"862282-863449";i:10;s:1:"+";i:11;s:6:"BB0819";i:12;s:0:"";i:13;s:6:"BB0819";i:14;s:6:"Operon";i:15;s:4:"9604";i:16;s:80:"BB0814(panF);BB0815;BB0816;BB0817(murC);BB0818;BB0819;BB0820;BB0821(miaA);BB0822";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"901485-901577";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"901798-902899";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:6:"BB0854";i:14;s:11:"Single gene";i:15;s:7:"1421115";i:16;s:12:"BB0854(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"901599-901718";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"901798-902899";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:6:"BB0854";i:14;s:11:"Single gene";i:15;s:7:"1421115";i:16;s:12:"BB0854(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2944505-2944593";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2943133-2944345";i:10;s:1:"-";i:11;s:5:"dadA3";i:12;s:41:"D-amino acid dehydrogenase small subunit ";i:13;s:6:"BB2777";i:14;s:11:"Single gene";i:15;s:7:"1421651";i:16;s:13:"BB2777(dadA3)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4245362-4245555";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4244310-4245318";i:10;s:1:"-";i:11;s:6:"BB3995";i:12;s:28:"Putative Ca2+/Na+ antiporter";i:13;s:6:"BB3995";i:14;s:11:"Single gene";i:15;s:7:"1421993";i:16;s:6:"BB3995";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4752631-4752790";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4752861-4754751";i:10;s:1:"+";i:11;s:6:"BB4457";i:12;s:31:"Putative outer membrane protein";i:13;s:6:"BB4457";i:14;s:6:"Operon";i:15;s:5:"24886";i:16;s:53:"BB4457;BB4458;BB4459(thiG);BB4460(thiD);BB4461;BB4462";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4852801-4852881";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4850952-4851567";i:10;s:1:"-";i:11;s:6:"BB4553";i:12;s:0:"";i:13;s:6:"BB4553";i:14;s:6:"Operon";i:15;s:5:"24907";i:16;s:19:"BB4553;BB4554(metX)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002927.3";i:2;s:31:"Bordetella bronchiseptica RB50 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5289498-5289651";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5289761-5290454";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:6:"BB4971";i:14;s:11:"Single gene";i:15;s:7:"1422271";i:16;s:12:"BB4971(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}
