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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15956-16054
(+)
SAM
16093-17083 (+)
SAV0012
Putative homoserine-o-acetyltransferase
SAV0012
Single gene
DOOR ID:
1419551
SAV0012
View Structure
2
430754-430856
(+)
purine
431086-431665 (+)
xprT
Xanthine phosphoribosyltransferase (XPRTase) (2)
SAV0388
Operon
DOOR ID:
23304
SAV0388
(xprT)
,
SAV0389
(pbuX)
,
SAV0390
(guaB)
,
SAV0391
(guaA)
View Structure
3
785440-785486
(-)
PreQ1
784601-785270 (-)
SAV0712
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SAV0712
Operon
DOOR ID:
23373
SAV0710,
SAV0711,
SAV0712
View Structure
4
907210-907313
(+)
SAM
907401-908427 (+)
SAV0837
Methionine import ATP-binding protein MetN 2
SAV0837
Operon
DOOR ID:
23396
SAV0837,
SAV0838,
SAV0839
View Structure
5
994904-994994
(+)
preQ1-II
996116-996377 (+)
SAV0955
Polyribonucleotide nucleotidyltransferase
SAV0955
Single gene
DOOR ID:
1419916
SAV0955
View Structure
6
1072227-1072333
(+)
yybP-ykoY
1072408-1073212 (+)
SAV1022
Toxic anion resistance protein homologue
SAV1022
Single gene
DOOR ID:
1419939
SAV1022
View Structure
7
1132300-1132400
(-)
TPP
1131647-1132223 (-)
SAV1077
SAV1077
Operon
DOOR ID:
23441
SAV1075,
SAV1076,
SAV1077
View Structure
8
1475815-1475990
(+)
lysine
1476071-1477277 (+)
lysC
Aspartokinase
SAV1393
Operon
DOOR ID:
23503
SAV1393
(lysC)
,
SAV1394
(asd)
,
SAV1395
(dapA)
,
SAV1396
(dapB)
,
SAV1397
(dapD)
View Structure
9
1600210-1600344
(-)
FMN
1599602-1600148 (-)
SAV1485
Riboflavin transporter
SAV1485
Single gene
DOOR ID:
1420113
SAV1485
View Structure
10
1653278-1653375
(-)
glycine
1652111-1653203 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SAV1537
Operon
DOOR ID:
23539
SAV1535,
SAV1536,
SAV1537
(gcvT)
View Structure
11
1790135-1790310
(-)
lysine
1788496-1789990 (-)
SAV1681
Putative amino-acid permease
SAV1681
Single gene
DOOR ID:
1420633
SAV1681
View Structure
12
1906238-1906373
(-)
FMN
1905067-1906111 (-)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
SAV1771
Operon
DOOR ID:
23588
SAV1767
(ribH)
,
SAV1769
(ribA)
,
SAV1770
(ribB)
,
SAV1771
(ribD)
View Structure
13
1922310-1922421
(-)
SAM
1921007-1922204 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SAV1790
Single gene
DOOR ID:
1420212
SAV1790
(metK)
View Structure
14
2226483-2226585
(-)
TPP
2225713-2226403 (-)
SAV2094
Aminopyrimidine aminohydrolase (Thiaminase II)
SAV2094
Operon
DOOR ID:
23660
SAV2091
(thiE)
,
SAV2092
(thiM)
,
SAV2093
(thiD)
,
SAV2094
View Structure
15
2281810-2282026
(-)
glmS
2279802-2281608 (-)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
SAV2154
Single gene
DOOR ID:
1420345
SAV2154
(glmS)
View Structure
16
2451050-2451145
(-)
SAM
2449659-2451039 (-)
SAV2326
Putative Na+/H+ antiporter
SAV2326
Single gene
DOOR ID:
1420416
SAV2326
View Structure
Genome:
Staphylococcus aureus subsp. aureus Mu50
(
NC_002758.2
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15956-16054";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16093-17083";i:10;s:1:"+";i:11;s:7:"SAV0012";i:12;s:39:"Putative homoserine-o-acetyltransferase";i:13;s:7:"SAV0012";i:14;s:11:"Single gene";i:15;s:7:"1419551";i:16;s:7:"SAV0012";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"430754-430856";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"431086-431665";i:10;s:1:"+";i:11;s:4:"xprT";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:7:"SAV0388";i:14;s:6:"Operon";i:15;s:5:"23304";i:16;s:55:"SAV0388(xprT);SAV0389(pbuX);SAV0390(guaB);SAV0391(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"785440-785486";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"784601-785270";i:10;s:1:"-";i:11;s:7:"SAV0712";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:7:"SAV0712";i:14;s:6:"Operon";i:15;s:5:"23373";i:16;s:23:"SAV0710;SAV0711;SAV0712";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"907210-907313";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"907401-908427";i:10;s:1:"+";i:11;s:7:"SAV0837";i:12;s:45:"Methionine import ATP-binding protein MetN 2 ";i:13;s:7:"SAV0837";i:14;s:6:"Operon";i:15;s:5:"23396";i:16;s:23:"SAV0837;SAV0838;SAV0839";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"994904-994994";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"996116-996377";i:10;s:1:"+";i:11;s:7:"SAV0955";i:12;s:41:"Polyribonucleotide nucleotidyltransferase";i:13;s:7:"SAV0955";i:14;s:11:"Single gene";i:15;s:7:"1419916";i:16;s:7:"SAV0955";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1072227-1072333";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1072408-1073212";i:10;s:1:"+";i:11;s:7:"SAV1022";i:12;s:40:"Toxic anion resistance protein homologue";i:13;s:7:"SAV1022";i:14;s:11:"Single gene";i:15;s:7:"1419939";i:16;s:7:"SAV1022";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1132300-1132400";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1131647-1132223";i:10;s:1:"-";i:11;s:7:"SAV1077";i:12;s:0:"";i:13;s:7:"SAV1077";i:14;s:6:"Operon";i:15;s:5:"23441";i:16;s:23:"SAV1075;SAV1076;SAV1077";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1475815-1475990";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1476071-1477277";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:7:"SAV1393";i:14;s:6:"Operon";i:15;s:5:"23503";i:16;s:68:"SAV1393(lysC);SAV1394(asd);SAV1395(dapA);SAV1396(dapB);SAV1397(dapD)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1600210-1600344";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1599602-1600148";i:10;s:1:"-";i:11;s:7:"SAV1485";i:12;s:22:"Riboflavin transporter";i:13;s:7:"SAV1485";i:14;s:11:"Single gene";i:15;s:7:"1420113";i:16;s:7:"SAV1485";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1653278-1653375";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1652111-1653203";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:7:"SAV1537";i:14;s:6:"Operon";i:15;s:5:"23539";i:16;s:29:"SAV1535;SAV1536;SAV1537(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1790135-1790310";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1788496-1789990";i:10;s:1:"-";i:11;s:7:"SAV1681";i:12;s:28:"Putative amino-acid permease";i:13;s:7:"SAV1681";i:14;s:11:"Single gene";i:15;s:7:"1420633";i:16;s:7:"SAV1681";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1906238-1906373";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1905067-1906111";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:7:"SAV1771";i:14;s:6:"Operon";i:15;s:5:"23588";i:16;s:55:"SAV1767(ribH);SAV1769(ribA);SAV1770(ribB);SAV1771(ribD)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1922310-1922421";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1921007-1922204";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:7:"SAV1790";i:14;s:11:"Single gene";i:15;s:7:"1420212";i:16;s:13:"SAV1790(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2226483-2226585";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2225713-2226403";i:10;s:1:"-";i:11;s:7:"SAV2094";i:12;s:47:"Aminopyrimidine aminohydrolase (Thiaminase II)";i:13;s:7:"SAV2094";i:14;s:6:"Operon";i:15;s:5:"23660";i:16;s:49:"SAV2091(thiE);SAV2092(thiM);SAV2093(thiD);SAV2094";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2281810-2282026";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2279802-2281608";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:7:"SAV2154";i:14;s:11:"Single gene";i:15;s:7:"1420345";i:16;s:13:"SAV2154(glmS)";i:17;s:99:"carbohydrate derivative biosynthetic process [GO:1901137]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_002758.2";i:2;s:41:"Staphylococcus aureus subsp. aureus Mu50 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2451050-2451145";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2449659-2451039";i:10;s:1:"-";i:11;s:7:"SAV2326";i:12;s:26:"Putative Na+/H+ antiporter";i:13;s:7:"SAV2326";i:14;s:11:"Single gene";i:15;s:7:"1420416";i:16;s:7:"SAV2326";i:17;s:0:"";i:18;s:15:"View Structure ";}}