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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
15956-16054
(+)
SAM
16092-17082 (+)
SA0011
SA0011 protein
SA0011
Single gene
DOOR ID:
1415655
SA0011
View Structure
2
430797-430899
(+)
purine
431129-431708 (+)
xprT
Xanthine phosphoribosyltransferase (XPRTase) (2)
SA0373
Operon
DOOR ID:
21267
SA0373
(xprT)
,
SA0374
(pbuX)
,
SA0375
(guaB)
,
SA0376
(guaA)
View Structure
3
761191-761237
(-)
PreQ1
760352-761021 (-)
SA0667
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
SA0667
Operon
DOOR ID:
21331
SA0665,
SA0666,
SA0667
View Structure
4
875406-875509
(+)
SAM
875597-876623 (+)
SA0769
Methionine import ATP-binding protein MetN 2
SA0769
Operon
DOOR ID:
21350
SA0769,
SA0770,
SA0771
View Structure
5
918620-918710
(+)
preQ1-II
919832-920093 (+)
SA0816
SA0816 protein
SA0816
Single gene
DOOR ID:
1416004
SA0816
View Structure
6
995898-996004
(+)
yybP-ykoY
996079-996883 (+)
SA0878
SA0878 protein
SA0878
Single gene
DOOR ID:
1416027
SA0878
View Structure
7
1055972-1056072
(-)
TPP
1055319-1055895 (-)
SA0929
SA0929
Operon
DOOR ID:
21382
SA0927,
SA0928,
SA0929
View Structure
8
1399486-1399661
(+)
lysine
1399742-1400948 (+)
lysC
SA1225
Operon
DOOR ID:
21443
SA1225
(lysC)
,
SA1226
(asd)
,
SA1227
(dapA)
,
SA1228
(dapB)
,
SA1229
(dapD)
View Structure
9
1523798-1523932
(-)
FMN
1523190-1523736 (-)
SA1316
Riboflavin transporter
SA1316
Single gene
DOOR ID:
1416202
SA1316
View Structure
10
1576866-1576963
(-)
glycine
1575699-1576791 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SA1367
Operon
DOOR ID:
21479
SA1365,
SA1366,
SA1367
(gcvT)
View Structure
11
1713742-1713917
(-)
lysine
1712103-1713597 (-)
lysP
SA1505
Single gene
DOOR ID:
1416249
SA1505
(lysP)
View Structure
12
1828445-1828580
(-)
FMN
1827274-1828318 (-)
ribD
SA1589
Operon
DOOR ID:
21525
SA1586
(ribH)
,
SA1587
(ribA)
,
SA1588
(ribB)
,
SA1589
(ribD)
View Structure
13
1844517-1844628
(-)
SAM
1843214-1844411 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
SA1608
Single gene
DOOR ID:
1416303
SA1608
(metK)
View Structure
14
2150051-2150153
(-)
TPP
2149281-2149971 (-)
SA1897
Aminopyrimidine aminohydrolase (Thiaminase II)
SA1897
Operon
DOOR ID:
21596
SA1894
(thiE)
,
SA1895
(thiM)
,
SA1896
(thiD)
,
SA1897
View Structure
15
2212090-2212306
(-)
glmS
2210082-2211888 (-)
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
SA1959
Single gene
DOOR ID:
1416442
SA1959
(glmS)
View Structure
16
2381550-2381645
(-)
SAM
2380159-2381539 (-)
SA2117
SA2117 protein
SA2117
Single gene
DOOR ID:
1416515
SA2117
View Structure
Genome:
Staphylococcus aureus subsp. aureus N315
(
NC_002745.2
);
Phylum:
Firmicutes
a:17:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"15956-16054";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:11:"16092-17082";i:10;s:1:"+";i:11;s:6:"SA0011";i:12;s:14:"SA0011 protein";i:13;s:6:"SA0011";i:14;s:11:"Single gene";i:15;s:7:"1415655";i:16;s:6:"SA0011";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"430797-430899";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"431129-431708";i:10;s:1:"+";i:11;s:4:"xprT";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:6:"SA0373";i:14;s:6:"Operon";i:15;s:5:"21267";i:16;s:51:"SA0373(xprT);SA0374(pbuX);SA0375(guaB);SA0376(guaA)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"761191-761237";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"760352-761021";i:10;s:1:"-";i:11;s:6:"SA0667";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:6:"SA0667";i:14;s:6:"Operon";i:15;s:5:"21331";i:16;s:20:"SA0665;SA0666;SA0667";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"875406-875509";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"875597-876623";i:10;s:1:"+";i:11;s:6:"SA0769";i:12;s:45:"Methionine import ATP-binding protein MetN 2 ";i:13;s:6:"SA0769";i:14;s:6:"Operon";i:15;s:5:"21350";i:16;s:20:"SA0769;SA0770;SA0771";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"918620-918710";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"919832-920093";i:10;s:1:"+";i:11;s:6:"SA0816";i:12;s:14:"SA0816 protein";i:13;s:6:"SA0816";i:14;s:11:"Single gene";i:15;s:7:"1416004";i:16;s:6:"SA0816";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"995898-996004";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"996079-996883";i:10;s:1:"+";i:11;s:6:"SA0878";i:12;s:14:"SA0878 protein";i:13;s:6:"SA0878";i:14;s:11:"Single gene";i:15;s:7:"1416027";i:16;s:6:"SA0878";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1055972-1056072";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1055319-1055895";i:10;s:1:"-";i:11;s:6:"SA0929";i:12;s:0:"";i:13;s:6:"SA0929";i:14;s:6:"Operon";i:15;s:5:"21382";i:16;s:20:"SA0927;SA0928;SA0929";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1399486-1399661";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1399742-1400948";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:6:"SA1225";i:14;s:6:"Operon";i:15;s:5:"21443";i:16;s:63:"SA1225(lysC);SA1226(asd);SA1227(dapA);SA1228(dapB);SA1229(dapD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1523798-1523932";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1523190-1523736";i:10;s:1:"-";i:11;s:6:"SA1316";i:12;s:22:"Riboflavin transporter";i:13;s:6:"SA1316";i:14;s:11:"Single gene";i:15;s:7:"1416202";i:16;s:6:"SA1316";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1576866-1576963";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1575699-1576791";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:6:"SA1367";i:14;s:6:"Operon";i:15;s:5:"21479";i:16;s:26:"SA1365;SA1366;SA1367(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1713742-1713917";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1712103-1713597";i:10;s:1:"-";i:11;s:4:"lysP";i:12;s:0:"";i:13;s:6:"SA1505";i:14;s:11:"Single gene";i:15;s:7:"1416249";i:16;s:12:"SA1505(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1828445-1828580";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1827274-1828318";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:0:"";i:13;s:6:"SA1589";i:14;s:6:"Operon";i:15;s:5:"21525";i:16;s:51:"SA1586(ribH);SA1587(ribA);SA1588(ribB);SA1589(ribD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1844517-1844628";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1843214-1844411";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:6:"SA1608";i:14;s:11:"Single gene";i:15;s:7:"1416303";i:16;s:12:"SA1608(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2150051-2150153";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2149281-2149971";i:10;s:1:"-";i:11;s:6:"SA1897";i:12;s:47:"Aminopyrimidine aminohydrolase (Thiaminase II)";i:13;s:6:"SA1897";i:14;s:6:"Operon";i:15;s:5:"21596";i:16;s:45:"SA1894(thiE);SA1895(thiM);SA1896(thiD);SA1897";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2212090-2212306";i:6;s:1:"-";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"2210082-2211888";i:10;s:1:"-";i:11;s:4:"glmS";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:6:"SA1959";i:14;s:11:"Single gene";i:15;s:7:"1416442";i:16;s:12:"SA1959(glmS)";i:17;s:99:"carbohydrate derivative biosynthetic process [GO:1901137]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_002745.2";i:2;s:41:"Staphylococcus aureus subsp. aureus N315 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2381550-2381645";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2380159-2381539";i:10;s:1:"-";i:11;s:6:"SA2117";i:12;s:14:"SA2117 protein";i:13;s:6:"SA2117";i:14;s:11:"Single gene";i:15;s:7:"1416515";i:16;s:6:"SA2117";i:17;s:0:"";i:18;s:15:"View Structure ";}}