RiboswitchDB

Genome: Streptococcus pyogenes SF370 (NC_002737.1); Phylum: Firmicutes

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

319186-319309 (+)

FMN

319387-319951 (+)

SPy_0373

Riboflavin transporter

Operon

DOOR ID: 20881

SPy_0373,
SPy_0374

2

482860-482956 (-)

TPP

482251-482815 (-)

SPy_0600

Single gene

DOOR ID: 1415222

SPy_0600

3

610439-610554 (+)

preQ1-II

611245-613204 (+)

ligA

DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])

Operon

DOOR ID: 20940

SPy_0751 (ligA),
SPy_0752

4

930749-930844 (+)

purine

930930-931512 (+)

xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)

Operon

DOOR ID: 21015

SPy_1136 (xpt),
SPy_1137

5

1046442-1046528 (+)

glycine

1046655-1047978 (+)

SPy_1270

Putative amino acid symporter

Single gene

DOOR ID: 1415385

SPy_1270

a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002737.1";i:2;s:29:"Streptococcus pyogenes SF370 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"319186-319309";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"319387-319951";i:10;s:1:"+";i:11;s:8:"SPy_0373";i:12;s:22:"Riboflavin transporter";i:13;s:8:"SPy_0373";i:14;s:6:"Operon";i:15;s:5:"20881";i:16;s:17:"SPy_0373;SPy_0374";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002737.1";i:2;s:29:"Streptococcus pyogenes SF370 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"482860-482956";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"482251-482815";i:10;s:1:"-";i:11;s:8:"SPy_0600";i:12;s:0:"";i:13;s:8:"SPy_0600";i:14;s:11:"Single gene";i:15;s:7:"1415222";i:16;s:8:"SPy_0600";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002737.1";i:2;s:29:"Streptococcus pyogenes SF370 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"610439-610554";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"611245-613204";i:10;s:1:"+";i:11;s:4:"ligA";i:12;s:55:"DNA ligase  (Polydeoxyribonucleotide synthase [NAD(+)])";i:13;s:8:"SPy_0751";i:14;s:6:"Operon";i:15;s:5:"20940";i:16;s:23:"SPy_0751(ligA);SPy_0752";i:17;s:53:"DNA repair [GO:0006281]; DNA replication [GO:0006260]";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002737.1";i:2;s:29:"Streptococcus pyogenes SF370 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"930749-930844";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"930930-931512";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:8:"SPy_1136";i:14;s:6:"Operon";i:15;s:5:"21015";i:16;s:22:"SPy_1136(xpt);SPy_1137";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure
";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002737.1";i:2;s:29:"Streptococcus pyogenes SF370 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1046442-1046528";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1046655-1047978";i:10;s:1:"+";i:11;s:8:"SPy_1270";i:12;s:29:"Putative amino acid symporter";i:13;s:8:"SPy_1270";i:14;s:11:"Single gene";i:15;s:7:"1415385";i:16;s:8:"SPy_1270";i:17;s:0:"";i:18;s:15:"View Structure
";}}