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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
32806-32887
(+)
ZMP-ZTP
32913-33546 (+)
CC_0029
Efflux protein; LysE family
CC_0029
Operon
DOOR ID:
20035
CC_0029,
CC_0030
View Structure
2
88947-89027
(+)
ZMP-ZTP
89052-90642 (+)
purH
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
CC_0086
Operon
DOOR ID:
20048
CC_0086
(purH)
,
CC_0087
View Structure
3
502948-503176
(+)
cobalamin
503293-505627 (+)
CC_0482
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
CC_0482
Single gene
DOOR ID:
1413760
CC_0482
View Structure
4
1924997-1925186
(+)
cobalamin
1925321-1927274 (+)
CC_1750
TonB-dependent receptor
CC_1750
Operon
DOOR ID:
20399
CC_1750,
CC_1751
View Structure
5
2092731-2092829
(+)
glycine
2092968-2093094 (-)
CC_1896
CC_1896
Single gene
DOOR ID:
1414304
CC_1896
View Structure
6
2234186-2234291
(-)
TPP
2232273-2234112 (-)
CC_2029
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CC_2029
Operon
DOOR ID:
20460
CC_2028,
CC_2029
View Structure
7
2571369-2571478
(-)
yybP-ykoY
2570707-2571331 (-)
CC_2370
CC_2370
Single gene
DOOR ID:
1414488
CC_2370
View Structure
8
3603430-3603520
(-)
glycine
3602133-3603261 (-)
CC_3355
Glycine cleavage system T protein
CC_3355
Operon
DOOR ID:
20736
CC_3352,
CC_3353,
CC_3354,
CC_3355
View Structure
9
3682527-3682615
(-)
glycine
3679751-3682154 (-)
CC_3436
TonB-dependent receptor
CC_3436
Single gene
DOOR ID:
1414951
CC_3436
View Structure
10
3687008-3687052
(-)
mini-ykkC
3686664-3686985 (-)
CC_3443
CC_3443
Single gene
DOOR ID:
1414954
CC_3443
View Structure
Genome:
Caulobacter crescentus CB15
(
NC_002696.2
);
Phylum:
Alphaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002696.2";i:2;s:28:"Caulobacter crescentus CB15 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2571369-2571478";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2570707-2571331";i:10;s:1:"-";i:11;s:7:"CC_2370";i:12;s:0:"";i:13;s:7:"CC_2370";i:14;s:11:"Single gene";i:15;s:7:"1414488";i:16;s:7:"CC_2370";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002696.2";i:2;s:28:"Caulobacter crescentus CB15 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3603430-3603520";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3602133-3603261";i:10;s:1:"-";i:11;s:7:"CC_3355";i:12;s:33:"Glycine cleavage system T protein";i:13;s:7:"CC_3355";i:14;s:6:"Operon";i:15;s:5:"20736";i:16;s:31:"CC_3352;CC_3353;CC_3354;CC_3355";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002696.2";i:2;s:28:"Caulobacter crescentus CB15 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3682527-3682615";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3679751-3682154";i:10;s:1:"-";i:11;s:7:"CC_3436";i:12;s:23:"TonB-dependent receptor";i:13;s:7:"CC_3436";i:14;s:11:"Single gene";i:15;s:7:"1414951";i:16;s:7:"CC_3436";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002696.2";i:2;s:28:"Caulobacter crescentus CB15 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3687008-3687052";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3686664-3686985";i:10;s:1:"-";i:11;s:7:"CC_3443";i:12;s:0:"";i:13;s:7:"CC_3443";i:14;s:11:"Single gene";i:15;s:7:"1414954";i:16;s:7:"CC_3443";i:17;s:0:"";i:18;s:15:"View Structure ";}}
