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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80330-80429
(-)
TPP
79315-80299 (-)
tbpA
Thiamin-binding periplasmic protein
ECs0072
Operon
DOOR ID:
19010
ECs0070
(thiQ)
,
ECs0071
(thiP)
,
ECs0072
(tbpA)
View Structure
2
939277-939421
(+)
MOCO
940419-940932 (+)
ECs0860
Molybdenum cofactor biosynthesis protein B
ECs0860
Operon
DOOR ID:
19174
ECs0859
(moaA)
,
ECs0860,
ECs0861
(moaC)
,
ECs0862
(moaD)
,
ECs0863
(moaE)
View Structure
3
2507285-2507386
(+)
yybP-ykoY
2507463-2508084 (+)
ECs2531
Probable manganese efflux pump MntP
ECs2531
Single gene
DOOR ID:
1412488
ECs2531
View Structure
4
2858869-2858965
(-)
TPP
2858045-2858834 (-)
ECs2907
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECs2907
Operon
DOOR ID:
19553
ECs2904,
ECs2905,
ECs2906,
ECs2907
View Structure
5
3930664-3930812
(-)
FMN
3929906-3930560 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECs3929
Single gene
DOOR ID:
1412849
ECs3929
(ribB)
View Structure
6
4972649-4972839
(+)
cobalamin
4972903-4974748 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ECs4897
Operon
DOOR ID:
19950
ECs4897
(btuB)
,
ECs4898
View Structure
7
5005005-5005105
(-)
TPP
5003028-5004924 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECs4917
Operon
DOOR ID:
19955
ECs4913
(thiH)
,
ECs4914
(thiG)
,
ECs5575,
ECs4915
(thiF)
,
ECs4916
(thiE)
,
ECs4917
(thiC)
View Structure
8
5086585-5086781
(-)
lysine
5085143-5086493 (-)
ECs5007
Aspartokinase
ECs5007
Single gene
DOOR ID:
1413185
ECs5007
View Structure
9
5231092-5231138
(+)
mini-ykkC
5231469-5232003 (-)
ECs5130
ECs5130
Operon
DOOR ID:
19989
ECs5130,
ECs5131
(ampC)
,
ECs5132,
ECs5133,
ECs5134,
ECs5135
View Structure
10
5322954-5323069
(+)
Mg sensor
5323162-5325859 (+)
ECs5219
Magnesium ABC transporter ATPase (Magnesium transporter) (Mg2+ transport ATPase) (Mg2+-importing ATPase; P-type 1)
ECs5219
Single gene
DOOR ID:
1413273
ECs5219
View Structure
Genome:
Escherichia coli O157:H7 str. Sakai
(
NC_002695.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"80330-80429";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"79315-80299";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:35:"Thiamin-binding periplasmic protein";i:13;s:7:"ECs0072";i:14;s:6:"Operon";i:15;s:5:"19010";i:16;s:41:"ECs0070(thiQ);ECs0071(thiP);ECs0072(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"939277-939421";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"940419-940932";i:10;s:1:"+";i:11;s:7:"ECs0860";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:7:"ECs0860";i:14;s:6:"Operon";i:15;s:5:"19174";i:16;s:63:"ECs0859(moaA);ECs0860;ECs0861(moaC);ECs0862(moaD);ECs0863(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2507285-2507386";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2507463-2508084";i:10;s:1:"+";i:11;s:7:"ECs2531";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:7:"ECs2531";i:14;s:11:"Single gene";i:15;s:7:"1412488";i:16;s:7:"ECs2531";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2858869-2858965";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2858045-2858834";i:10;s:1:"-";i:11;s:7:"ECs2907";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:7:"ECs2907";i:14;s:6:"Operon";i:15;s:5:"19553";i:16;s:31:"ECs2904;ECs2905;ECs2906;ECs2907";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3930664-3930812";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3929906-3930560";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:7:"ECs3929";i:14;s:11:"Single gene";i:15;s:7:"1412849";i:16;s:13:"ECs3929(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4972649-4972839";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4972903-4974748";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:7:"ECs4897";i:14;s:6:"Operon";i:15;s:5:"19950";i:16;s:21:"ECs4897(btuB);ECs4898";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5005005-5005105";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5003028-5004924";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:7:"ECs4917";i:14;s:6:"Operon";i:15;s:5:"19955";i:16;s:77:"ECs4913(thiH);ECs4914(thiG);ECs5575;ECs4915(thiF);ECs4916(thiE);ECs4917(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5086585-5086781";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"5085143-5086493";i:10;s:1:"-";i:11;s:7:"ECs5007";i:12;s:14:"Aspartokinase ";i:13;s:7:"ECs5007";i:14;s:11:"Single gene";i:15;s:7:"1413185";i:16;s:7:"ECs5007";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5231092-5231138";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5231469-5232003";i:10;s:1:"-";i:11;s:7:"ECs5130";i:12;s:0:"";i:13;s:7:"ECs5130";i:14;s:6:"Operon";i:15;s:5:"19989";i:16;s:53:"ECs5130;ECs5131(ampC);ECs5132;ECs5133;ECs5134;ECs5135";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002695.1";i:2;s:36:"Escherichia coli O157:H7 str. Sakai ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5322954-5323069";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5323162-5325859";i:10;s:1:"+";i:11;s:7:"ECs5219";i:12;s:115:"Magnesium ABC transporter ATPase (Magnesium transporter) (Mg2+ transport ATPase) (Mg2+-importing ATPase; P-type 1)";i:13;s:7:"ECs5219";i:14;s:11:"Single gene";i:15;s:7:"1413273";i:16;s:7:"ECs5219";i:17;s:0:"";i:18;s:15:"View Structure ";}}