About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
274025-274097
(+)
fluoride
274175-275444 (+)
eno
Enolase 2 (1) (2-phospho-D-glycerate hydro-lyase 2) (2-phosphoglycerate dehydratase 2)
L0008
Single gene
DOOR ID:
1405521
L0008
(eno)
View Structure
2
316797-316896
(-)
TPP
316201-316777 (-)
ydbH
L116212
Operon
DOOR ID:
16187
L115671
(ydbF)
,
L116212
(ydbH)
View Structure
3
802553-802658
(+)
preQ1-II
803268-803901 (+)
yiaD
L3272
Single gene
DOOR ID:
1405728
L3272
(yiaD)
View Structure
4
907249-907410
(+)
ykoK
907790-908990 (+)
ftsW2
Cell division protein FtsW
L107499
Operon
DOOR ID:
16310
L107499
(ftsW2)
,
L108747
(yjaH)
,
L109013
(yjaI)
,
L109379
(yjaJ)
View Structure
5
1021729-1021845
(+)
FMN
1022027-1023116 (+)
ribG
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
L0163
Operon
DOOR ID:
16332
L0163
(ribG)
,
L0164
(ribB)
,
L0165
(ribA)
,
L0166
(ribH)
View Structure
6
1105212-1105286
(+)
fluoride
1105377-1106589 (+)
ylaD
L105113
Single gene
DOOR ID:
1405834
L105113
(ylaD)
View Structure
7
1159509-1159606
(+)
purine
1159717-1160311 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
L159396
Operon
DOOR ID:
16368
L159396
(xpt)
,
L160092
(pbuX)
View Structure
8
1288760-1288920
(-)
ykoK
1285768-1288501 (-)
mgtA
Cation-transporting P-ATPase
L85514
Single gene
DOOR ID:
1405877
L85514
(mgtA)
View Structure
9
1295897-1295999
(-)
TPP
1295063-1295816 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
L94809
Operon
DOOR ID:
16395
L0201
(thiE)
,
L0200
(thiD1)
,
L94809
(thiM)
View Structure
10
1307745-1307881
(-)
FMN
1307009-1307630 (-)
ynaE
Riboflavin transporter
L106755
Single gene
DOOR ID:
1406350
L106755
(ynaE)
View Structure
11
1665745-1665920
(-)
lysine
1664750-1665644 (-)
dapA
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
L0093
Single gene
DOOR ID:
1406027
L0093
(dapA)
View Structure
12
2276232-2276414
(+)
lysine
2276517-2278038 (+)
lysP
Lysine specific permease
L59950
Single gene
DOOR ID:
1406292
L59950
(lysP)
View Structure
Genome:
Lactococcus lactis subsp. lactis Il1403
(
NC_002662.1
);
Phylum:
Firmicutes
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"274025-274097";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"274175-275444";i:10;s:1:"+";i:11;s:3:"eno";i:12;s:86:"Enolase 2 (1) (2-phospho-D-glycerate hydro-lyase 2) (2-phosphoglycerate dehydratase 2)";i:13;s:5:"L0008";i:14;s:11:"Single gene";i:15;s:7:"1405521";i:16;s:10:"L0008(eno)";i:17;s:31:"glycolytic process [GO:0006096]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"316797-316896";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"316201-316777";i:10;s:1:"-";i:11;s:4:"ydbH";i:12;s:0:"";i:13;s:7:"L116212";i:14;s:6:"Operon";i:15;s:5:"16187";i:16;s:27:"L115671(ydbF);L116212(ydbH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"802553-802658";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"803268-803901";i:10;s:1:"+";i:11;s:4:"yiaD";i:12;s:0:"";i:13;s:5:"L3272";i:14;s:11:"Single gene";i:15;s:7:"1405728";i:16;s:11:"L3272(yiaD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"907249-907410";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"907790-908990";i:10;s:1:"+";i:11;s:5:"ftsW2";i:12;s:26:"Cell division protein FtsW";i:13;s:7:"L107499";i:14;s:6:"Operon";i:15;s:5:"16310";i:16;s:56:"L107499(ftsW2);L108747(yjaH);L109013(yjaI);L109379(yjaJ)";i:17;s:51:"cell cycle [GO:0007049]; cell division [GO:0051301]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1021729-1021845";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1022027-1023116";i:10;s:1:"+";i:11;s:4:"ribG";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:5:"L0163";i:14;s:6:"Operon";i:15;s:5:"16332";i:16;s:47:"L0163(ribG);L0164(ribB);L0165(ribA);L0166(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1105212-1105286";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1105377-1106589";i:10;s:1:"+";i:11;s:4:"ylaD";i:12;s:0:"";i:13;s:7:"L105113";i:14;s:11:"Single gene";i:15;s:7:"1405834";i:16;s:13:"L105113(ylaD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1159509-1159606";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1159717-1160311";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:7:"L159396";i:14;s:6:"Operon";i:15;s:5:"16368";i:16;s:26:"L159396(xpt);L160092(pbuX)";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1288760-1288920";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1285768-1288501";i:10;s:1:"-";i:11;s:4:"mgtA";i:12;s:28:"Cation-transporting P-ATPase";i:13;s:6:"L85514";i:14;s:11:"Single gene";i:15;s:7:"1405877";i:16;s:12:"L85514(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1295897-1295999";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1295063-1295816";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:6:"L94809";i:14;s:6:"Operon";i:15;s:5:"16395";i:16;s:37:"L0201(thiE);L0200(thiD1);L94809(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1307745-1307881";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1307009-1307630";i:10;s:1:"-";i:11;s:4:"ynaE";i:12;s:22:"Riboflavin transporter";i:13;s:7:"L106755";i:14;s:11:"Single gene";i:15;s:7:"1406350";i:16;s:13:"L106755(ynaE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1665745-1665920";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1664750-1665644";i:10;s:1:"-";i:11;s:4:"dapA";i:12;s:58:"4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) ";i:13;s:5:"L0093";i:14;s:11:"Single gene";i:15;s:7:"1406027";i:16;s:11:"L0093(dapA)";i:17;s:111:"diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_002662.1";i:2;s:40:"Lactococcus lactis subsp. lactis Il1403 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2276232-2276414";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2276517-2278038";i:10;s:1:"+";i:11;s:4:"lysP";i:12;s:24:"Lysine specific permease";i:13;s:6:"L59950";i:14;s:11:"Single gene";i:15;s:7:"1406292";i:16;s:12:"L59950(lysP)";i:17;s:0:"";i:18;s:15:"View Structure ";}}