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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80331-80430
(-)
TPP
79316-80300 (-)
tbpA
Thiamin-binding periplasmic protein
Z0077
Operon
DOOR ID:
15101
Z0075
(thiQ)
,
Z0076
(thiP)
,
Z0077
(tbpA)
View Structure
2
940930-941074
(+)
MOCO
942072-942585 (+)
moaB
Molybdenum cofactor biosynthesis protein B
Z1001
Operon
DOOR ID:
15262
Z1000
(moaA)
,
Z1001
(moaB)
,
Z1002
(moaC)
,
Z1003
(moaD)
,
Z1004
(moaE)
View Structure
3
2582491-2582592
(+)
yybP-ykoY
2582669-2583290 (+)
Z2864
Probable manganese efflux pump MntP
Z2864
Single gene
DOOR ID:
1404375
Z2864
View Structure
4
2929088-2929184
(-)
TPP
2928264-2929053 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Z3268
Operon
DOOR ID:
15652
Z3264
(yegW)
,
Z3266
(yegX)
,
Z3267
(thiD)
,
Z3268
(thiM)
View Structure
5
3997979-3998127
(-)
FMN
3997221-3997875 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Z4399
Single gene
DOOR ID:
1404807
Z4399
(ribB)
View Structure
6
5041415-5041605
(+)
cobalamin
5041669-5043514 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Z5527
Operon
DOOR ID:
16055
Z5527
(btuB)
,
Z5528
(murI)
View Structure
7
5073751-5073851
(-)
TPP
5071774-5073670 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Z5569
Operon
DOOR ID:
16060
Z5564
(thiH)
,
Z5565
(thiG)
,
Z5566
(thiS)
,
Z5567
(thiF)
,
Z5568
(thiE)
,
Z5569
(thiC)
View Structure
8
5116571-5116767
(-)
lysine
5115129-5116479 (-)
lysC
Aspartokinase
Z5622
Single gene
DOOR ID:
1405143
Z5622
(lysC)
View Structure
9
5261077-5261123
(+)
mini-ykkC
5261454-5261988 (-)
blc
Z5756
Operon
DOOR ID:
16088
Z5756
(blc)
,
Z5757
(ampC)
,
Z5758
(frdD)
,
Z5759
(frdC)
,
Z5760
(frdB)
,
Z5762
(frdA)
View Structure
10
5352939-5353054
(+)
Mg sensor
5353147-5355844 (+)
mgtA
Magnesium-transporting ATPase; P-type 1 (Mg(2+) transport ATPase; P-type 1)
Z5853
Single gene
DOOR ID:
1405232
Z5853
(mgtA)
View Structure
Genome:
Escherichia coli O157:H7 str. EDL933
(
NC_002655.2
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"80331-80430";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"79316-80300";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:35:"Thiamin-binding periplasmic protein";i:13;s:5:"Z0077";i:14;s:6:"Operon";i:15;s:5:"15101";i:16;s:35:"Z0075(thiQ);Z0076(thiP);Z0077(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"940930-941074";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"942072-942585";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:5:"Z1001";i:14;s:6:"Operon";i:15;s:5:"15262";i:16;s:59:"Z1000(moaA);Z1001(moaB);Z1002(moaC);Z1003(moaD);Z1004(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2582491-2582592";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2582669-2583290";i:10;s:1:"+";i:11;s:5:"Z2864";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:5:"Z2864";i:14;s:11:"Single gene";i:15;s:7:"1404375";i:16;s:5:"Z2864";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2929088-2929184";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2928264-2929053";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:5:"Z3268";i:14;s:6:"Operon";i:15;s:5:"15652";i:16;s:47:"Z3264(yegW);Z3266(yegX);Z3267(thiD);Z3268(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3997979-3998127";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3997221-3997875";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:5:"Z4399";i:14;s:11:"Single gene";i:15;s:7:"1404807";i:16;s:11:"Z4399(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5041415-5041605";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5041669-5043514";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:5:"Z5527";i:14;s:6:"Operon";i:15;s:5:"16055";i:16;s:23:"Z5527(btuB);Z5528(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5073751-5073851";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5071774-5073670";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:5:"Z5569";i:14;s:6:"Operon";i:15;s:5:"16060";i:16;s:71:"Z5564(thiH);Z5565(thiG);Z5566(thiS);Z5567(thiF);Z5568(thiE);Z5569(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5116571-5116767";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"5115129-5116479";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:5:"Z5622";i:14;s:11:"Single gene";i:15;s:7:"1405143";i:16;s:11:"Z5622(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5261077-5261123";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5261454-5261988";i:10;s:1:"-";i:11;s:3:"blc";i:12;s:0:"";i:13;s:5:"Z5756";i:14;s:6:"Operon";i:15;s:5:"16088";i:16;s:70:"Z5756(blc);Z5757(ampC);Z5758(frdD);Z5759(frdC);Z5760(frdB);Z5762(frdA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_002655.2";i:2;s:37:"Escherichia coli O157:H7 str. EDL933 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5352939-5353054";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5353147-5355844";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:76:"Magnesium-transporting ATPase; P-type 1 (Mg(2+) transport ATPase; P-type 1)";i:13;s:5:"Z5853";i:14;s:11:"Single gene";i:15;s:7:"1405232";i:16;s:11:"Z5853(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}