Genome: Bacillus subtilis subsp. subtilis str. 168 (NC_000964.3); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 200017-200187 (+)glmS200276-202079 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BSU01780Single gene

DOOR ID: 1389766		BSU01780 (glmS) View Structure
2 486092-486235 (+)ydaO-yuaA486431-488255 (+)ydaO

Uncharacterized amino acid permease YdaO		BSU04320Single gene

DOOR ID: 1389835		BSU04320 (ydaO) View Structure
3 626347-626446 (-)purine625124-626291 (-)pbuE

Purine efflux pump PbuE		BSU05800Single gene

DOOR ID: 1391364		BSU05800 (pbuE) View Structure
4 694425-694526 (+)purine694661-695984 (+)pbuG

Guanine/hypoxanthine permease PbuG		BSU06370Single gene

DOOR ID: 1389924		BSU06370 (pbuG) View Structure
5 698369-698470 (+)purine698611-699100 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		BSU06420Operon

DOOR ID: 1171277		BSU06530 (purD),
BSU06520 (purH),
BSU06510 (purN),
BSU06500 (purM),
BSU06490 (purF),
BSU06480 (purL),
BSU06470 (purQ),
BSU06460 (purS),
BSU06450 (purC),
BSU06440 (purB),
BSU06430 (purK),
BSU06420 (purE)		 View Structure
6 955655-955762 (+)TPP955894-957667 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BSU08790Single gene

DOOR ID: 1391090		BSU08790 (thiC) View Structure
7 1180685-1180802 (-)SAM1178756-1180595 (-)yitJ

Bifunctional homocysteine S-methyltransferase/5;10-methylenetetrahydrofolate reductase [Includes: Homocysteine S-methyltransferase (0)]		BSU11010Single gene

DOOR ID: 1390099		BSU11010 (yitJ) View Structure
8 1242262-1242370 (+)TPP1242448-1243159 (+)tenA

Aminopyrimidine aminohydrolase (4-amino-5-aminomethyl-2-methylpyrimidine hydrolase) (Thiaminase II)		BSU11650Operon

DOOR ID: 1171369		BSU11710 (yjbV),
BSU11700 (thiF),
BSU11690 (thiG),
BSU11680 (thiS),
BSU11670 (thiO),
BSU11660 (tenI),
BSU11650 (tenA)		 View Structure
9 1258304-1258424 (+)SAM1258491-1259613 (+)yjcI

Cystathionine gamma-synthase/O-acetylhomoserine (thiol)-lyase (CGS/OAH thiolyase) (O-acetylhomoserine sulfhydrylase) (OAH sulfhydrylase)		BSU11870Operon

DOOR ID: 1171373		BSU11880 (yjcJ),
BSU11870 (yjcI)		 View Structure
10 1376328-1376439 (+)ykkC-yxkD1376516-1376855 (+)ykkC

Probable guanidinium efflux system subunit GdnC		BSU13090Operon

DOOR ID: 1171396		BSU13100 (ykkD),
BSU13090 (ykkC)		 View Structure
11 1385736-1385891 (-)SAM1383319-1385608 (-)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme) (Superoxide-inducible protein 9) (SOI9)		BSU13180Single gene

DOOR ID: 1391135		BSU13180 (metE) View Structure
12 1391739-1391851 (-)TPP1391039-1391642 (-)thiU

Putative HMP/thiamine-binding protein YkoF		BSU13240Operon

DOOR ID: 1171399		BSU13240 (thiU),
BSU13230 (thiV),
BSU13220 (thiW),
BSU13210 (thiX)		 View Structure
13 1395616-1395781 (+)ykoK1396012-1397368 (+)mgtE

Magnesium transporter MgtE		BSU13300Single gene

DOOR ID: 1390173		BSU13300 (mgtE) View Structure
14 1410625-1410727 (+)yybP-ykoY1411891-1412647 (+)sigI

RNA polymerase sigma factor SigI		BSU13450Operon

DOOR ID: 1171403		BSU13460 (rsgI),
BSU13450 (sigI)		 View Structure
15 1424527-1424683 (-)SAM1423240-1424440 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BSU13560Operon

DOOR ID: 1171406		BSU13560 (mtnK),
BSU13550 (mtnA)		 View Structure
16 1426876-1426976 (+)SAM1427033-1428278 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		BSU13590Operon

DOOR ID: 1171407		BSU13620 (mtnD),
BSU13610 (mtnB),
BSU13600 (mtnX),
BSU13590 (mtnW)		 View Structure
17 1439274-1439318 (+)PreQ11439447-1440107 (+)queC

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BSU13720Operon

DOOR ID: 1171409		BSU13750 (ykvM),
BSU13740 (queE),
BSU13730 (queD),
BSU13720 (queC)		 View Structure
18 1607367-1607468 (+)TPP1607555-1608836 (+)ylmB

N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase (Formylaminopyrimidine deformylase) (Amidohydrolase YlmB)		BSU15350Operon

DOOR ID: 1171444		BSU15360 (ylmC),
BSU15350 (ylmB)		 View Structure
19 1630115-1630220 (+)SAM1630381-1631083 (+)cysH

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)		BSU15570Operon

DOOR ID: 1171448		BSU15630 (sirC),
BSU15620 (sirB),
BSU15610 (sumT),
BSU15600 (cysC),
BSU15590 (sat),
BSU15580 (cysP),
BSU15570 (cysH)		 View Structure
20 2025160-2025251 (-)SAM2024041-2025076 (-)yoaD

Putative 2-hydroxyacid dehydrogenase YoaD 		BSU18560Operon

DOOR ID: 1171499		BSU18560 (yoaD),
BSU18550 (yoaC)		 View Structure
21 2320114-2320213 (-)purine2319439-2320024 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BSU22070Operon

DOOR ID: 1171571		BSU22070 (xpt),
BSU22060 (pbuX)		 View Structure
22 2410743-2410877 (-)FMN2410016-2410589 (-)fmnP

Riboflavin transporter FmnP (FMN permease) (Riboflavin ECF transporter S component FmnP)		BSU23050Single gene

DOOR ID: 1390481		BSU23050 (fmnP) View Structure
23 2431473-2431617 (-)FMN2430257-2431343 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		BSU23280Operon

DOOR ID: 1171600		BSU23280 (ribD),
BSU23270 (ribE),
BSU23260 (ribA),
BSU23250 (ribH)		 View Structure
24 2910872-2911051 (-)lysine2909519-2910746 (-)lysC

Aspartokinase 2 (Aspartate kinase 2) (Aspartokinase II)		BSU28470Single gene

DOOR ID: 1390621		BSU28470 (lysC) View Structure
25 3129195-3129333 (-)SAM3127824-3129027 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BSU30550Single gene

DOOR ID: 1390682		BSU30550 (metK) View Structure
26 3179105-3179206 (+)TPP3179305-3179884 (+)thiT

Thiamine transporter ThiT (Thiamine ECF transporter S component ThiT)		BSU30990Single gene

DOOR ID: 1390694		BSU30990 (thiT) View Structure
27 3188193-3188341 (+)ydaO-yuaA3188413-3189082 (+)ktrA

Ktr system potassium uptake protein A (K(+)-uptake protein KtrA)		BSU31090Operon

DOOR ID: 1171759		 View Structure
28 3364397-3364503 (-)SAM3363265-3364291 (-)metQ

Methionine import ATP-binding protein MetN 		BSU32750Operon

DOOR ID: 1171788		BSU32750 (metQ),
BSU32740 (metP),
BSU32730 (metN)		 View Structure
29 3404542-3404681 (-)cobalamin3403492-3404437 (-)yvrC

Uncharacterized ABC transporter substrate-binding lipoprotein YvrC		BSU33180Operon

DOOR ID: 1171799		BSU33180 (yvrC),
BSU33170 (yvrB),
BSU33160 (yvrA),
BSU33150 (yvqK)		 View Structure
30 3421169-3421348 (-)lysine3419655-3421065 (-)lysP

Putative arginine/ornithine antiporter		BSU33330Single gene

DOOR ID: 1390762		BSU33330 (lysP) View Structure
31 3988840-3988942 (-)ykkC-yxkD3987926-3988763 (-)yxkD

UPF0750 membrane protein YxkD		BSU38840Single gene

DOOR ID: 1390951		BSU38840 (yxkD) View Structure
32 3997775-3997881 (+)SAM3997963-3999097 (+)yxjH

Uncharacterized protein YxjH		BSU38950Single gene

DOOR ID: 1391335		BSU38950 (yxjH) View Structure
33 3999166-3999272 (+)SAM3999349-4000486 (+)yxjG

Uncharacterized protein YxjG		BSU38960Single gene

DOOR ID: 1391336		BSU38960 (yxjG) View Structure
34 4005523-4005624 (+)purine4005751-4006945 (+)yxjA

Purine nucleoside transport protein NupG		BSU39020Single gene

DOOR ID: 1391337		BSU39020 (yxjA) View Structure
35 4169799-4169927 (-)yybP-ykoY4169165-4169612 (-)yybP

Uncharacterized lipoprotein YybP		BSU40560Single gene

DOOR ID: 1390992		BSU40560 (yybP) View Structure