RiboswitchDB

Genome: Thermotoga maritima MSB8 (NC_000853.1); Phylum: Thermotogae

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

84124-84324 (-)

cobalamin

82212-83181 (-)

TM0079

Operon

DOOR ID: 215

TM0078,
TM0079,
TM0080

2

809942-810052 (+)

TPP

810096-810849 (+)

TM0787

Operon

DOOR ID: 359

TM0787,
TM0788,
TM0789,
TM0790,
TM0791,
TM0792,
TM0793,
TM0794

3

1201537-1201650 (+)

glycine

1201826-1202033 (-)

mgsA

Operon

DOOR ID: 439

TM1186,
TM1187

4

1519073-1519251 (-)

lysine

1518007-1518991 (-)

TM1523

Operon

DOOR ID: 495

TM1516,
TM1517,
TM1518,
TM1519,
TM1520,
TM1521 (dapA),
TM1522,
TM1523

5

1804171-1804292 (-)

FMN

1803064-1804111 (-)

TM1828

Operon

DOOR ID: 551

TM1824,
TM1825 (ribH),
TM1826,
TM1827,
TM1828

a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_000853.1";i:2;s:25:"Thermotoga maritima MSB8 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:11:"84124-84324";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:11:"82212-83181";i:10;s:1:"-";i:11;s:6:"TM0079";i:12;s:0:"";i:13;s:6:"TM0079";i:14;s:6:"Operon";i:15;s:3:"215";i:16;s:20:"TM0078;TM0079;TM0080";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_000853.1";i:2;s:25:"Thermotoga maritima MSB8 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"809942-810052";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"810096-810849";i:10;s:1:"+";i:11;s:6:"TM0787";i:12;s:0:"";i:13;s:6:"TM0787";i:14;s:6:"Operon";i:15;s:3:"359";i:16;s:55:"TM0787;TM0788;TM0789;TM0790;TM0791;TM0792;TM0793;TM0794";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_000853.1";i:2;s:25:"Thermotoga maritima MSB8 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1201537-1201650";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1201826-1202033";i:10;s:1:"-";i:11;s:4:"mgsA";i:12;s:0:"";i:13;s:6:"TM1186";i:14;s:6:"Operon";i:15;s:3:"439";i:16;s:13:"TM1186;TM1187";i:17;s:0:"";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_000853.1";i:2;s:25:"Thermotoga maritima MSB8 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1519073-1519251";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1518007-1518991";i:10;s:1:"-";i:11;s:6:"TM1523";i:12;s:0:"";i:13;s:6:"TM1523";i:14;s:6:"Operon";i:15;s:3:"495";i:16;s:61:"TM1516;TM1517;TM1518;TM1519;TM1520;TM1521(dapA);TM1522;TM1523";i:17;s:0:"";i:18;s:15:"View Structure
";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_000853.1";i:2;s:25:"Thermotoga maritima MSB8 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1804171-1804292";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1803064-1804111";i:10;s:1:"-";i:11;s:6:"TM1828";i:12;s:0:"";i:13;s:6:"TM1828";i:14;s:6:"Operon";i:15;s:3:"551";i:16;s:40:"TM1824;TM1825(ribH);TM1826;TM1827;TM1828";i:17;s:0:"";i:18;s:15:"View Structure
";}}