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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
381496-381577
(-)
SAH
380061-381471 (-)
PSJM300_01745
PSJM300_01745
Operon
DOOR ID:
1134021
PSJM300_01740,
PSJM300_01745
View Structure
2
501050-501156
(+)
TPP
501259-503140 (+)
PSJM300_02245
PSJM300_02245
Single gene
DOOR ID:
3877043
PSJM300_02245
View Structure
3
1117988-1118099
(+)
SAH
1118817-1119534 (+)
PSJM300_05100
PSJM300_05100
Operon
DOOR ID:
1134157
PSJM300_05100,
PSJM300_05105
View Structure
4
1681339-1681391
(-)
mini-ykkC
1681003-1681318 (-)
PSJM300_07880
PSJM300_07880
Single gene
DOOR ID:
3877499
PSJM300_07880
View Structure
5
1991859-1992078
(+)
cobalamin
1992196-1994062 (+)
PSJM300_09245
PSJM300_09245
Operon
DOOR ID:
1134323
PSJM300_09245,
PSJM300_09250,
PSJM300_09255
View Structure
6
2731289-2731344
(+)
SAH
2731823-2733182 (+)
rumA
PSJM300_12405
Operon
DOOR ID:
1134454
PSJM300_12400
(cysM)
,
PSJM300_12405
(rumA)
View Structure
7
2902447-2902514
(+)
SAH
2902689-2902878 (-)
PSJM300_13235
PSJM300_13235
Operon
DOOR ID:
1134487
PSJM300_13235,
PSJM300_13240,
PSJM300_13245
View Structure
8
3296762-3296886
(+)
yybP-ykoY
3296980-3297568 (+)
PSJM300_15105
PSJM300_15105
Single gene
DOOR ID:
3878065
PSJM300_15105
View Structure
9
3464999-3465212
(+)
cobalamin
3465316-3467239 (+)
PSJM300_15895
PSJM300_15895
Single gene
DOOR ID:
3878123
PSJM300_15895
View Structure
10
3476434-3476600
(-)
FMN
3475688-3476351 (-)
PSJM300_15955
PSJM300_15955
Operon
DOOR ID:
1134604
PSJM300_15950,
PSJM300_15955
View Structure
11
3612817-3612910
(+)
glycine
3613084-3613519 (-)
PSJM300_16590
PSJM300_16590
Single gene
DOOR ID:
3878197
PSJM300_16590
View Structure
12
4095702-4095796
(-)
glycine
4094276-4095539 (-)
PSJM300_18870
PSJM300_18870
Single gene
DOOR ID:
3878358
PSJM300_18870
View Structure
Genome:
Pseudomonas stutzeri DSM 10701
(
NC_018177.1
);
Phylum:
Gammaproteobacteria
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";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4095702-4095796";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4094276-4095539";i:10;s:1:"-";i:11;s:13:"PSJM300_18870";i:12;s:0:"";i:13;s:13:"PSJM300_18870";i:14;s:11:"Single gene";i:15;s:7:"3878358";i:16;s:13:"PSJM300_18870";i:17;s:0:"";i:18;s:15:"View Structure ";}}
