Genome: Bacillus sp. JS (NC_017743.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 204303-204473 (+)glmS204562-206365 (+)MY9_0183

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
MY9_0183Operon

DOOR ID: 1286035
MY9_0183,
MY9_0182
View Structure
2 481550-481693 (+)ydaO-yuaA481714-481828 (-)MY9_0451

MY9_0451Single gene

DOOR ID: 3772313
MY9_0451 View Structure
3 498206-498336 (+)ydaO-yuaA498402-499647 (+)MY9_0470

Proton/sodium-glutamate symport protein
MY9_0470Operon

DOOR ID: 1286103
MY9_0472,
MY9_0471,
MY9_0470
View Structure
4 646578-646677 (-)purine645355-646522 (-)MY9_0643

Major facilitator superfamily transporter
MY9_0643Single gene

DOOR ID: 3772397
MY9_0643 View Structure
5 721492-721593 (+)purine721727-723050 (+)MY9_0712

PbuG
MY9_0712Single gene

DOOR ID: 3772412
MY9_0712 View Structure
6 725432-725533 (+)purine725674-726163 (+)MY9_0717

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)
MY9_0717Operon

DOOR ID: 1286154
MY9_0728,
MY9_0727,
MY9_0726,
MY9_0725,
MY9_0724,
MY9_0723,
MY9_0722,
MY9_0721,
MY9_0720,
MY9_0719,
MY9_0718,
MY9_0717
View Structure
7 1008424-1008531 (+)TPP1008663-1010436 (+)MY9_0970

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
MY9_0970Operon

DOOR ID: 1286200
MY9_0970,
MY9_0969,
MY9_0968
View Structure
8 1228585-1228702 (-)SAM1226656-1228495 (-)MY9_1199

MY9_1199Single gene

DOOR ID: 3772620
MY9_1199 View Structure
9 1290365-1290473 (+)TPP1290552-1291263 (+)MY9_1270

Aminopyrimidine aminohydrolase
MY9_1270Operon

DOOR ID: 1286260
MY9_1276,
MY9_1275,
MY9_1274,
MY9_1273,
MY9_1272,
MY9_1271,
MY9_1270
View Structure
10 1306402-1306522 (+)SAM1306565-1307711 (+)MY9_1295

Cystathionine gamma-synthase
MY9_1295Operon

DOOR ID: 1286264
MY9_1296,
MY9_1295,
MY9_1294
View Structure
11 1425161-1425272 (+)ykkC-yxkD1425349-1425688 (+)MY9_1434

Efflux transporter
MY9_1434Operon

DOOR ID: 1286283
MY9_1435,
MY9_1434
View Structure
12 1435273-1435428 (-)SAM1432856-1435145 (-)MY9_1445

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MY9_1445Operon

DOOR ID: 1286286
MY9_1446,
MY9_1445
View Structure
13 1441277-1441389 (-)TPP1440576-1441179 (-)MY9_1453

Thiamine binding protein
MY9_1453Operon

DOOR ID: 1286288
MY9_1453,
MY9_1452,
MY9_1451,
MY9_1450
View Structure
14 1445149-1445314 (+)ykoK1445544-1446900 (+)MY9_1458

Magnesium transporter MgtE
MY9_1458Operon

DOOR ID: 1286290
MY9_1458,
MY9_1457
View Structure
15 1460158-1460260 (+)yybP-ykoY1461424-1462180 (+)MY9_1473

RNA polymerase sigma factor SigI
MY9_1473Operon

DOOR ID: 1286293
MY9_1474,
MY9_1473
View Structure
16 1474074-1474230 (-)SAM1472787-1473984 (-)MY9_1485

Methylthioribose kinase (MTR kinase) (00)
MY9_1485Operon

DOOR ID: 1286296
MY9_1485,
MY9_1484
View Structure
17 1476423-1476523 (+)SAM1476580-1477825 (+)MY9_1488

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)
MY9_1488Operon

DOOR ID: 1286297
MY9_1491,
MY9_1490,
MY9_1489,
MY9_1488
View Structure
18 1488807-1488851 (+)PreQ11488978-1489638 (+)MY9_1501

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
MY9_1501Operon

DOOR ID: 1286299
MY9_1503,
MY9_1502,
MY9_1501
View Structure
19 1653719-1653820 (+)TPP1653904-1655185 (+)MY9_1679

MY9_1679Operon

DOOR ID: 1286339
MY9_1686,
MY9_1685,
MY9_1684,
MY9_1683,
MY9_1682,
MY9_1681,
MY9_1680,
MY9_1679
View Structure
20 1676466-1676571 (+)SAM1676733-1677435 (+)MY9_1703

Phosphoadenosine phosphosulfate reductase (3'-phosphoadenylylsulfate reductase) (PAPS reductase; thioredoxin dependent) (PAPS sulfotransferase) (PAdoPS reductase)
MY9_1703Operon

DOOR ID: 1286343
MY9_1709,
MY9_1708,
MY9_1707,
MY9_1706,
MY9_1705,
MY9_1704,
MY9_1703
View Structure
21 2077683-2077774 (-)SAM2076552-2077566 (-)MY9_2025

Putative 2-hydroxyacid dehydrogenase
MY9_2025Operon

DOOR ID: 1286406
MY9_2025,
MY9_2024
View Structure
22 2226067-2226167 (-)purine2225391-2225976 (-)MY9_2211

Xanthine phosphoribosyltransferase (XPRTase) (2)
MY9_2211Operon

DOOR ID: 1286442
MY9_2211,
MY9_2210
View Structure
23 2316750-2316884 (-)FMN2316622-2316736 (-)MY9_2317

YpzE
MY9_2317Operon

DOOR ID: 1286468
MY9_2318,
MY9_2317,
MY9_2316
View Structure
24 2337413-2337557 (-)FMN2336197-2337283 (-)MY9_2341

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
MY9_2341Operon

DOOR ID: 1286473
MY9_2342,
MY9_2341,
MY9_2340,
MY9_2339,
MY9_2338
View Structure
25 2456059-2456160 (-)glycine2454798-2455887 (-)MY9_2479

Aminomethyltransferase (0) (Glycine cleavage system T protein)
MY9_2479Operon

DOOR ID: 1286503
MY9_2479,
MY9_2478,
MY9_2477
View Structure
26 2774094-2774273 (-)lysine2772741-2773968 (-)MY9_2838

Aspartokinase
MY9_2838Single gene

DOOR ID: 3773196
MY9_2838 View Structure
27 2993878-2994016 (-)SAM2992507-2993710 (-)MY9_3058

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
MY9_3058Single gene

DOOR ID: 3773266
MY9_3058 View Structure
28 3043882-3043983 (+)TPP3044082-3044661 (+)MY9_3106

Thiamin permease
MY9_3106Single gene

DOOR ID: 3773282
MY9_3106 View Structure
29 3052972-3053120 (+)ydaO-yuaA3053193-3053862 (+)MY9_3116

KtrA
MY9_3116Operon

DOOR ID: 1286640
MY9_3117,
MY9_3116
View Structure
30 3242367-3242473 (-)SAM3241235-3242333 (-)MY9_3313

Methionine import ATP-binding protein MetN
MY9_3313Operon

DOOR ID: 1286675
MY9_3313,
MY9_3312,
MY9_3311
View Structure
31 3282513-3282653 (-)cobalamin3281462-3282407 (-)MY9_3359

Putative lipoprotein
MY9_3359Operon

DOOR ID: 1286685
MY9_3359,
MY9_3358,
MY9_3357,
MY9_3356,
MY9_3355,
MY9_3354
View Structure
32 3299267-3299446 (-)lysine3297753-3299163 (-)MY9_3379

Amino acid transporter YvsH
MY9_3379Single gene

DOOR ID: 3773381
MY9_3379 View Structure
33 3891789-3891891 (-)ykkC-yxkD3890875-3891712 (-)MY9_4000

Efflux transporter
MY9_4000Single gene

DOOR ID: 3773607
MY9_4000 View Structure
34 3899253-3899359 (+)SAM3899365-3900574 (+)MY9_4011

Cobalamin-independent synthase; Catalytic domain-containing protein
MY9_4011Single gene

DOOR ID: 3773611
MY9_4011 View Structure
35 3900643-3900749 (+)SAM3900826-3901963 (+)MY9_4012

Cobalamin-independent methionine synthase; Catalytic domain-containing protein
MY9_4012Single gene

DOOR ID: 3773612
MY9_4012 View Structure
36 3906990-3907091 (+)purine3907218-3908412 (+)MY9_4020

Nucleoside permease
MY9_4020Single gene

DOOR ID: 3773614
MY9_4020 View Structure
37 4080739-4080823 (-)yybP-ykoY4080519-4080675 (-)MY9_4199

MY9_4199Operon

DOOR ID: 1286855
MY9_4199,
MY9_4198
View Structure