About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
183413-183535
(-)
glycine
182153-183281 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
RSPO_c00162
Operon
DOOR ID:
1269121
RSPO_c00162
(gcvT)
,
RSPO_c00161
(gcvH)
,
RSPO_c00160
(gcvP)
View Structure
2
183549-183646
(-)
glycine
182153-183281 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
RSPO_c00162
Operon
DOOR ID:
1269121
RSPO_c00162
(gcvT)
,
RSPO_c00161
(gcvH)
,
RSPO_c00160
(gcvP)
View Structure
3
1087222-1087478
(+)
cobalamin
1087571-1089482 (+)
aleB
Tonb-dependent siderophore receptor
RSPO_c01046
Operon
DOOR ID:
1269305
RSPO_c01053,
RSPO_c01052
(cobS)
,
RSPO_c01051
(cobT)
,
RSPO_c01050
(cobA)
,
RSPO_c01049
(hmuV)
,
RSPO_c01048
(btuC)
,
RSPO_c01046
(aleB)
View Structure
4
1407715-1407851
(-)
yybP-ykoY
1407057-1407672 (-)
RSPO_c01333
RSPO_c01333
Single gene
DOOR ID:
3704131
RSPO_c01333
View Structure
5
2748285-2748414
(+)
ZMP-ZTP
2748541-2749789 (+)
glyA1
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
RSPO_c02635
Single gene
DOOR ID:
3704532
RSPO_c02635
(glyA1)
View Structure
6
3373549-3373650
(+)
TPP
3373741-3375637 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
RSPO_c03253
Operon
DOOR ID:
1269791
RSPO_c03253
(thiC)
,
RSPO_c03254
(thiO)
,
RSPO_c03255
(thiS)
,
RSPO_c03256
(thiG)
,
RSPO_c03257
(thiE)
View Structure
7
3385037-3385113
(+)
SAH
3385236-3386661 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
RSPO_c03264
Operon
DOOR ID:
1269794
RSPO_c03264
(ahcY)
,
RSPO_c03265,
RSPO_c03266
(metF)
,
RSPO_c03267
(tfoX)
View Structure
Genome:
Ralstonia solanacearum Po82
(
NC_017574.1
);
Phylum:
Betaproteobacteria
a:8:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017574.1";i:2;s:28:"Ralstonia solanacearum Po82 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"183413-183535";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"182153-183281";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"RSPO_c00162";i:14;s:6:"Operon";i:15;s:7:"1269121";i:16;s:53:"RSPO_c00162(gcvT);RSPO_c00161(gcvH);RSPO_c00160(gcvP)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017574.1";i:2;s:28:"Ralstonia solanacearum Po82 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"183549-183646";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"182153-183281";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"RSPO_c00162";i:14;s:6:"Operon";i:15;s:7:"1269121";i:16;s:53:"RSPO_c00162(gcvT);RSPO_c00161(gcvH);RSPO_c00160(gcvP)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017574.1";i:2;s:28:"Ralstonia solanacearum Po82 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1087222-1087478";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1087571-1089482";i:10;s:1:"+";i:11;s:4:"aleB";i:12;s:35:"Tonb-dependent siderophore receptor";i:13;s:11:"RSPO_c01046";i:14;s:6:"Operon";i:15;s:7:"1269305";i:16;s:119:"RSPO_c01053;RSPO_c01052(cobS);RSPO_c01051(cobT);RSPO_c01050(cobA);RSPO_c01049(hmuV);RSPO_c01048(btuC);RSPO_c01046(aleB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017574.1";i:2;s:28:"Ralstonia solanacearum Po82 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1407715-1407851";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1407057-1407672";i:10;s:1:"-";i:11;s:11:"RSPO_c01333";i:12;s:0:"";i:13;s:11:"RSPO_c01333";i:14;s:11:"Single gene";i:15;s:7:"3704131";i:16;s:11:"RSPO_c01333";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017574.1";i:2;s:28:"Ralstonia solanacearum Po82 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2748285-2748414";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2748541-2749789";i:10;s:1:"+";i:11;s:5:"glyA1";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:11:"RSPO_c02635";i:14;s:11:"Single gene";i:15;s:7:"3704532";i:16;s:18:"RSPO_c02635(glyA1)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017574.1";i:2;s:28:"Ralstonia solanacearum Po82 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3373549-3373650";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3373741-3375637";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"RSPO_c03253";i:14;s:6:"Operon";i:15;s:7:"1269791";i:16;s:89:"RSPO_c03253(thiC);RSPO_c03254(thiO);RSPO_c03255(thiS);RSPO_c03256(thiG);RSPO_c03257(thiE)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017574.1";i:2;s:28:"Ralstonia solanacearum Po82 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3385037-3385113";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3385236-3386661";i:10;s:1:"+";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:11:"RSPO_c03264";i:14;s:6:"Operon";i:15;s:7:"1269794";i:16;s:65:"RSPO_c03264(ahcY);RSPO_c03265;RSPO_c03266(metF);RSPO_c03267(tfoX)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
