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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
51489-51593
(-)
TPP
50458-51238 (-)
tbpA
Thiamine-binding periplasmic protein TbpA
PAJ_0041
Operon
DOOR ID:
1056853
PAJ_0039
(thiQ)
,
PAJ_0040
(thiP)
,
PAJ_0041
(tbpA)
View Structure
2
657412-657545
(+)
MOCO
657963-658521 (+)
moaA
Molybdenum cofactor biosynthesis protein A MoaA
PAJ_0542
Operon
DOOR ID:
1056949
PAJ_0542
(moaA)
,
PAJ_0543
(moaB)
,
PAJ_0544
(moaC)
,
PAJ_0545
(moaD)
,
PAJ_0546
(moaE)
View Structure
3
1114559-1114628
(+)
fluoride
1115399-1119215 (-)
PAJ_0934
PAJ_0934
Single gene
DOOR ID:
3668250
PAJ_0934
View Structure
4
1173568-1173741
(+)
ykoK
1173814-1174834 (+)
PAJ_0980
Putative magnesium transporter
PAJ_0980
Single gene
DOOR ID:
3668276
PAJ_0980
View Structure
5
2201276-2201372
(-)
TPP
2199656-2200523 (-)
thiD
Phosphomethylpyrimidine kinase ThiD
PAJ_1818
Operon
DOOR ID:
1057174
PAJ_1818
(thiD)
,
PAJ_1819
(thiM)
View Structure
6
2404259-2404327
(+)
SAH
2404346-2405432 (-)
aroC
Chorismate synthase (CS) (5-enolpyruvylshikimate-3-phosphate phospholyase)
PAJ_1976
Operon
DOOR ID:
1057208
PAJ_1972
(yfcL)
,
PAJ_1973
(yfcM)
,
PAJ_1974
(yfcA)
,
PAJ_1975
(mepA)
,
PAJ_1976
(aroC)
,
PAJ_1977
(yfcB)
View Structure
7
3015034-3015103
(+)
fluoride
3015448-3015961 (-)
PAJ_2500
Acetyltransferase GNAT family
PAJ_2500
Single gene
DOOR ID:
3668945
PAJ_2500
View Structure
8
3063137-3063206
(-)
fluoride
3062149-3062971 (-)
PAJ_2527
Putative manganese-dependent inorganic pyrophosphatase
PAJ_2527
Single gene
DOOR ID:
3668962
PAJ_2527
View Structure
9
3174213-3174361
(-)
FMN
3173445-3174102 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
PAJ_2622
Single gene
DOOR ID:
3668995
PAJ_2622
(ribB)
View Structure
10
3610291-3610367
(-)
fluoride
3609835-3610288 (+)
crcB
Protein CrcB CrcB
PAJ_3016
Operon
DOOR ID:
1057406
PAJ_3015
(ypfH)
,
PAJ_3016
(crcB)
View Structure
11
3658965-3659148
(-)
cobalamin
3656372-3657098 (-)
murI
Glutamate racemase
PAJ_3051
Operon
DOOR ID:
1057411
PAJ_3051
(murI)
,
PAJ_3052
(btuB)
View Structure
12
4048012-4048110
(-)
TPP
4046003-4047926 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PAJ_3380
Operon
DOOR ID:
1057477
PAJ_3379
(thiE)
,
PAJ_3380
(thiC)
View Structure
13
4088470-4088662
(+)
lysine
4088772-4090125 (+)
lysC
Aspartokinase
PAJ_3407
Single gene
DOOR ID:
3669320
PAJ_3407
(lysC)
View Structure
Genome:
Pantoea ananatis AJ13355
(
NC_017531.1
);
Phylum:
Gammaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"51489-51593";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"50458-51238";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:41:"Thiamine-binding periplasmic protein TbpA";i:13;s:8:"PAJ_0041";i:14;s:6:"Operon";i:15;s:7:"1056853";i:16;s:44:"PAJ_0039(thiQ);PAJ_0040(thiP);PAJ_0041(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"657412-657545";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"657963-658521";i:10;s:1:"+";i:11;s:4:"moaA";i:12;s:47:"Molybdenum cofactor biosynthesis protein A MoaA";i:13;s:8:"PAJ_0542";i:14;s:6:"Operon";i:15;s:7:"1056949";i:16;s:74:"PAJ_0542(moaA);PAJ_0543(moaB);PAJ_0544(moaC);PAJ_0545(moaD);PAJ_0546(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1114559-1114628";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1115399-1119215";i:10;s:1:"-";i:11;s:8:"PAJ_0934";i:12;s:0:"";i:13;s:8:"PAJ_0934";i:14;s:11:"Single gene";i:15;s:7:"3668250";i:16;s:8:"PAJ_0934";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1173568-1173741";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1173814-1174834";i:10;s:1:"+";i:11;s:8:"PAJ_0980";i:12;s:30:"Putative magnesium transporter";i:13;s:8:"PAJ_0980";i:14;s:11:"Single gene";i:15;s:7:"3668276";i:16;s:8:"PAJ_0980";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2201276-2201372";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2199656-2200523";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:35:"Phosphomethylpyrimidine kinase ThiD";i:13;s:8:"PAJ_1818";i:14;s:6:"Operon";i:15;s:7:"1057174";i:16;s:29:"PAJ_1818(thiD);PAJ_1819(thiM)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2404259-2404327";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2404346-2405432";i:10;s:1:"-";i:11;s:4:"aroC";i:12;s:75:"Chorismate synthase (CS) (5-enolpyruvylshikimate-3-phosphate phospholyase)";i:13;s:8:"PAJ_1976";i:14;s:6:"Operon";i:15;s:7:"1057208";i:16;s:89:"PAJ_1972(yfcL);PAJ_1973(yfcM);PAJ_1974(yfcA);PAJ_1975(mepA);PAJ_1976(aroC);PAJ_1977(yfcB)";i:17;s:106:"aromatic amino acid family biosynthetic process [GO:0009073]; chorismate biosynthetic process [GO:0009423]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3015034-3015103";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3015448-3015961";i:10;s:1:"-";i:11;s:8:"PAJ_2500";i:12;s:29:"Acetyltransferase GNAT family";i:13;s:8:"PAJ_2500";i:14;s:11:"Single gene";i:15;s:7:"3668945";i:16;s:8:"PAJ_2500";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3063137-3063206";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3062149-3062971";i:10;s:1:"-";i:11;s:8:"PAJ_2527";i:12;s:54:"Putative manganese-dependent inorganic pyrophosphatase";i:13;s:8:"PAJ_2527";i:14;s:11:"Single gene";i:15;s:7:"3668962";i:16;s:8:"PAJ_2527";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3174213-3174361";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3173445-3174102";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"PAJ_2622";i:14;s:11:"Single gene";i:15;s:7:"3668995";i:16;s:14:"PAJ_2622(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3610291-3610367";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3609835-3610288";i:10;s:1:"+";i:11;s:4:"crcB";i:12;s:17:"Protein CrcB CrcB";i:13;s:8:"PAJ_3016";i:14;s:6:"Operon";i:15;s:7:"1057406";i:16;s:29:"PAJ_3015(ypfH);PAJ_3016(crcB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3658965-3659148";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3656372-3657098";i:10;s:1:"-";i:11;s:4:"murI";i:12;s:19:"Glutamate racemase ";i:13;s:8:"PAJ_3051";i:14;s:6:"Operon";i:15;s:7:"1057411";i:16;s:29:"PAJ_3051(murI);PAJ_3052(btuB)";i:17;s:123:"cell wall organization [GO:0071555]; peptidoglycan biosynthetic process [GO:0009252]; regulation of cell shape [GO:0008360]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4048012-4048110";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4046003-4047926";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"PAJ_3380";i:14;s:6:"Operon";i:15;s:7:"1057477";i:16;s:29:"PAJ_3379(thiE);PAJ_3380(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_017531.1";i:2;s:24:"Pantoea ananatis AJ13355";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4088470-4088662";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4088772-4090125";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:8:"PAJ_3407";i:14;s:11:"Single gene";i:15;s:7:"3669320";i:16;s:14:"PAJ_3407(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}
