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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
180782-180870
(+)
TPP
181018-181942 (-)
LC40_0108
Transposase
LC40_0108
Single gene
DOOR ID:
3633415
LC40_0108
View Structure
2
912206-912340
(-)
FMN
909196-910390 (-)
LC40_0519
GTP cyclohydrolase-2 (5) (GTP cyclohydrolase II)
LC40_0519
Single gene
DOOR ID:
3633636
LC40_0519
View Structure
3
949000-949100
(-)
TPP
948033-948819 (-)
LC40_0530
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
LC40_0530
Single gene
DOOR ID:
3633644
LC40_0530
View Structure
4
1004087-1004267
(+)
lysine
1004357-1005677 (+)
LC40_0560
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LC40_0560
Single gene
DOOR ID:
3633672
LC40_0560
View Structure
5
1026147-1026266
(+)
FMN
1027167-1028070 (+)
LC40_0575
LC40_0575
Single gene
DOOR ID:
3633680
LC40_0575
View Structure
6
1539672-1539768
(-)
SMK_box
1532419-1534837 (-)
LC40_0860
Leucine--tRNA ligase (Leucyl-tRNA synthetase) (LeuRS)
LC40_0860
Single gene
DOOR ID:
3633858
LC40_0860
View Structure
7
1732860-1732952
(-)
TPP
1728555-1729365 (+)
LC40_0965
Transposase
LC40_0965
Single gene
DOOR ID:
3633918
LC40_0965
View Structure
8
1737898-1738068
(-)
lysine
1736317-1737808 (-)
LC40_0972
APC family amino acid-polyamine-organocation transporter
LC40_0972
Single gene
DOOR ID:
3633920
LC40_0972
View Structure
9
1927451-1927550
(+)
purine
1927597-1928929 (+)
LC40_1076
Xanthine-uracil transport protein
LC40_1076
Single gene
DOOR ID:
3633999
LC40_1076
View Structure
10
1940046-1940135
(+)
TPP
1940787-1942170 (+)
LC40_1084
ABC superfamily ATP binding cassette transporter ABC protein
LC40_1084
Single gene
DOOR ID:
3634007
LC40_1084
View Structure
Genome:
Lactobacillus fermentum CECT 5716
(
NC_017465.1
);
Phylum:
Firmicutes
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_017465.1";i:2;s:34:"Lactobacillus fermentum CECT 5716 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1004087-1004267";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1004357-1005677";i:10;s:1:"+";i:11;s:9:"LC40_0560";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"LC40_0560";i:14;s:11:"Single gene";i:15;s:7:"3633672";i:16;s:9:"LC40_0560";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_017465.1";i:2;s:34:"Lactobacillus fermentum CECT 5716 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1026147-1026266";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1027167-1028070";i:10;s:1:"+";i:11;s:9:"LC40_0575";i:12;s:0:"";i:13;s:9:"LC40_0575";i:14;s:11:"Single gene";i:15;s:7:"3633680";i:16;s:9:"LC40_0575";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_017465.1";i:2;s:34:"Lactobacillus fermentum CECT 5716 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1539672-1539768";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1532419-1534837";i:10;s:1:"-";i:11;s:9:"LC40_0860";i:12;s:54:"Leucine--tRNA ligase (Leucyl-tRNA synthetase) (LeuRS)";i:13;s:9:"LC40_0860";i:14;s:11:"Single gene";i:15;s:7:"3633858";i:16;s:9:"LC40_0860";i:17;s:39:"leucyl-tRNA aminoacylation [GO:0006429]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_017465.1";i:2;s:34:"Lactobacillus fermentum CECT 5716 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1732860-1732952";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1728555-1729365";i:10;s:1:"+";i:11;s:9:"LC40_0965";i:12;s:11:"Transposase";i:13;s:9:"LC40_0965";i:14;s:11:"Single gene";i:15;s:7:"3633918";i:16;s:9:"LC40_0965";i:17;s:70:"DNA integration [GO:0015074]; transposition; DNA-mediated [GO:0006313]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_017465.1";i:2;s:34:"Lactobacillus fermentum CECT 5716 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1737898-1738068";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1736317-1737808";i:10;s:1:"-";i:11;s:9:"LC40_0972";i:12;s:56:"APC family amino acid-polyamine-organocation transporter";i:13;s:9:"LC40_0972";i:14;s:11:"Single gene";i:15;s:7:"3633920";i:16;s:9:"LC40_0972";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_017465.1";i:2;s:34:"Lactobacillus fermentum CECT 5716 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1927451-1927550";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1927597-1928929";i:10;s:1:"+";i:11;s:9:"LC40_1076";i:12;s:33:"Xanthine-uracil transport protein";i:13;s:9:"LC40_1076";i:14;s:11:"Single gene";i:15;s:7:"3633999";i:16;s:9:"LC40_1076";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_017465.1";i:2;s:34:"Lactobacillus fermentum CECT 5716 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1940046-1940135";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1940787-1942170";i:10;s:1:"+";i:11;s:9:"LC40_1084";i:12;s:60:"ABC superfamily ATP binding cassette transporter ABC protein";i:13;s:9:"LC40_1084";i:14;s:11:"Single gene";i:15;s:7:"3634007";i:16;s:9:"LC40_1084";i:17;s:0:"";i:18;s:15:"View Structure ";}}
