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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
231193-231328
(+)
cobalamin
231476-231854 (+)
TCCBUS3UF1_2100
Thioesterase super
TCCBUS3UF1_2100
Operon
DOOR ID:
1021690
TCCBUS3UF1_2100,
TCCBUS3UF1_2110,
TCCBUS3UF1_2120,
TCCBUS3UF1_2130,
TCCBUS3UF1_2140,
TCCBUS3UF1_2150,
TCCBUS3UF1_2160
View Structure
2
979774-979933
(+)
cobalamin
979935-980064 (+)
TCCBUS3UF1_9960
TCCBUS3UF1_9960
Operon
DOOR ID:
1021844
TCCBUS3UF1_9960,
TCCBUS3UF1_9970,
TCCBUS3UF1_9980,
TCCBUS3UF1_9990,
TCCBUS3UF1_10000,
TCCBUS3UF1_10010,
TCCBUS3UF1_10020
View Structure
3
1104868-1105004
(-)
SAM
1103479-1104796 (-)
TCCBUS3UF1_11260
O-acetylhomoserine/O-acetylserine sulfhydrylase
TCCBUS3UF1_11260
Operon
DOOR ID:
1021868
TCCBUS3UF1_11250,
TCCBUS3UF1_11260
View Structure
4
1341960-1342069
(-)
TPP
1341267-1341888 (-)
TCCBUS3UF1_13470
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
TCCBUS3UF1_13470
Operon
DOOR ID:
1021909
TCCBUS3UF1_13410,
TCCBUS3UF1_13420,
TCCBUS3UF1_13430,
TCCBUS3UF1_13440,
TCCBUS3UF1_13450,
TCCBUS3UF1_13460,
TCCBUS3UF1_13470
View Structure
5
1443260-1443380
(-)
FMN
1442122-1443256 (-)
TCCBUS3UF1_14540
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
TCCBUS3UF1_14540
Operon
DOOR ID:
1021927
TCCBUS3UF1_14490,
TCCBUS3UF1_14500,
TCCBUS3UF1_14510,
TCCBUS3UF1_14520,
TCCBUS3UF1_14530,
TCCBUS3UF1_14540
View Structure
6
1914597-1914689
(-)
TPP
1913540-1914575 (-)
TCCBUS3UF1_19080
TCCBUS3UF1_19080
Operon
DOOR ID:
1022014
TCCBUS3UF1_19070,
TCCBUS3UF1_19080,
TCCBUS3UF1_19090,
TCCBUS3UF1_19100,
TCCBUS3UF1_19110,
TCCBUS3UF1_19120,
TCCBUS3UF1_19130
View Structure
Genome:
Thermus sp. CCB US3 UF1
(
NC_017278.1
);
Phylum:
Deinococcus-Thermus
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