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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
19860-19969
(+)
yybP-ykoY
20061-20616 (+)
VCLMA_A0020
VCLMA_A0020
Single gene
DOOR ID:
3558139
VCLMA_A0020
View Structure
2
59544-59642
(+)
TPP
59746-61687 (+)
thiC
VCLMA_A0057
Operon
DOOR ID:
1345073
VCLMA_A0062
(thiH)
,
VCLMA_A0061
(thiG)
,
VCLMA_A0060
(thiS)
,
VCLMA_A0059
(thiF)
,
VCLMA_A0058
(thiE)
,
VCLMA_A0057
(thiC)
View Structure
3
396906-397083
(-)
lysine
395439-396795 (-)
VCLMA_A0349
VCLMA_A0349
Single gene
DOOR ID:
3558270
VCLMA_A0349
View Structure
4
1276919-1277029
(+)
TPP
1277088-1277937 (+)
VCLMA_A1138
VCLMA_A1138
Single gene
DOOR ID:
3558605
VCLMA_A1138
View Structure
5
1385872-1385919
(+)
mini-ykkC
1385935-1386250 (+)
VCLMA_A1226
VCLMA_A1226
Single gene
DOOR ID:
3558650
VCLMA_A1226
View Structure
6
1416320-1416419
(-)
glycine
1414850-1416227 (-)
VCLMA_A1249
VCLMA_A1249
Single gene
DOOR ID:
3558659
VCLMA_A1249
View Structure
7
1654859-1655028
(+)
ykoK
1655130-1656483 (+)
VCLMA_A1442
VCLMA_A1442
Single gene
DOOR ID:
3558737
VCLMA_A1442
View Structure
8
1730416-1730502
(+)
c-di-GMP-I
1730615-1731203 (+)
VCLMA_A1508
VCLMA_A1508
single gene
DOOR ID:
3558764
VCLMA_A1508
View Structure
9
2552986-2553123
(-)
TPP
2551929-2552922 (-)
VCLMA_A2237
VCLMA_A2237
Operon
DOOR ID:
1345469
VCLMA_A2235,
VCLMA_A2236,
VCLMA_A2237,
VCLMA_A2238,
VCLMA_A2239,
VCLMA_A2240
View Structure
Genome:
Vibrio cholerae LMA3984-4 chromosome I
(
NC_017270.1
);
Phylum:
Gammaproteobacteria
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