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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
48078-48158
(+)
sam-alpha
49391-50006 (+)
BPTD_0047
BPTD_0047
Operon
DOOR ID:
1013824
BPTD_0046
(metX)
,
BPTD_0047
View Structure
2
197046-197138
(+)
glycine
197359-198460 (+)
gcvT
BPTD_0192
Operon
DOOR ID:
1013855
BPTD_0192
(gcvT)
,
BPTD_0193
(gcvH)
,
BPTD_0194
(gcvP)
View Structure
3
197160-197279
(+)
glycine
197359-198460 (+)
gcvT
BPTD_0192
Operon
DOOR ID:
1013855
BPTD_0192
(gcvT)
,
BPTD_0193
(gcvH)
,
BPTD_0194
(gcvP)
View Structure
4
209554-209665
(+)
TPP
209728-211642 (+)
thiC
BPTD_0204
Single gene
DOOR ID:
3537862
BPTD_0204
(thiC)
View Structure
5
478400-478553
(-)
FMN
477596-478289 (-)
ribB
BPTD_0462
Single gene
DOOR ID:
3537940
BPTD_0462
(ribB)
View Structure
6
3311347-3311467
(-)
SAH
3309826-3311245 (-)
acyH
BPTD_3032
Operon
DOOR ID:
1014413
BPTD_3029,
BPTD_3030,
BPTD_3031,
BPTD_3032
(acyH)
View Structure
7
3658370-3658563
(-)
yybP-ykoY
3657288-3658326 (-)
BPTD_3362
BPTD_3362
Single gene
DOOR ID:
3538590
BPTD_3362
View Structure
8
3849594-3849753
(+)
cobalamin
3849824-3851714 (+)
BPTD_3542
BPTD_3542
Operon
DOOR ID:
1014522
BPTD_3542,
BPTD_3543,
BPTD_3544
(thiG)
,
BPTD_3545
(thiD)
,
BPTD_3546
View Structure
Genome:
Bordetella pertussis CS
(
NC_017223.1
);
Phylum:
Betaproteobacteria
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