Genome: Bacillus amyloliquefaciens LL3 (NC_017190.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 187596-187767 (+)glmS187856-189659 (+)glmS

LL3_00183Operon

DOOR ID: 1009170		LL3_00182,
LL3_00183 (glmS)		 View Structure
2 423779-423925 (+)ydaO-yuaA424081-425902 (+)ydaO

LL3_00417Single gene

DOOR ID: 3521045		LL3_00417 (ydaO) View Structure
3 532617-532716 (-)purine531400-532561 (-)pbuE

LL3_00552Single gene

DOOR ID: 3521121		LL3_00552 (pbuE) View Structure
4 639730-639831 (+)purine639961-641284 (+)pbuG

LL3_00677Single gene

DOOR ID: 3521157		LL3_00677 (pbuG) View Structure
5 643542-643643 (+)purine643772-644261 (+)purE

LL3_00684Operon

DOOR ID: 1009263		LL3_00684 (purE),
LL3_00685 (purK),
LL3_00686 (purB),
LL3_00687 (purC),
LL3_00688 (purS),
LL3_00689 (purQ),
LL3_00690 (purL),
LL3_00691 (purF),
LL3_00692 (purM),
LL3_00693 (purN),
LL3_00694 (purH),
LL3_00695 (purD)		 View Structure
6 911510-911620 (+)TPP911739-913512 (+)thiC

LL3_00950Single gene

DOOR ID: 3521258		LL3_00950 (thiC) View Structure
7 1119864-1119986 (-)SAM1117932-1119774 (-)yitJ

LL3_01179Single gene

DOOR ID: 3521359		LL3_01179 (yitJ) View Structure
8 1180767-1180875 (+)TPP1180961-1181672 (+)tenA

LL3_01246Operon

DOOR ID: 1009375		LL3_01246 (tenA),
LL3_01247 (tenI),
LL3_01248 (thiO),
LL3_01249 (thiS),
LL3_01250 (thiG),
LL3_01251 (thiF),
LL3_01252 (thiD)		 View Structure
9 1199359-1199484 (+)SAM1199553-1200675 (+)metI

LL3_01275Operon

DOOR ID: 1009381		LL3_01275 (metI),
LL3_01276 (metC)		 View Structure
10 1311146-1311255 (+)ykkC-yxkD1311659-1311974 (+)ykkD

LL3_01409Operon

DOOR ID: 1009407		LL3_01408 (ykkC),
LL3_01409 (ykkD)		 View Structure
11 1326092-1326246 (-)SAM1323719-1326008 (-)metE

LL3_01423Single gene

DOOR ID: 3521443		LL3_01423 (metE) View Structure
12 1331587-1331700 (-)TPP1330805-1331405 (-)thiV

LL3_01428Operon

DOOR ID: 1009411		LL3_01426 (thiX),
LL3_01427 (thiW),
LL3_01428 (thiV)		 View Structure
13 1333458-1333623 (+)ykoK1333857-1335213 (+)mgtE

LL3_01432Single gene

DOOR ID: 3521449		LL3_01432 (mgtE) View Structure
14 1343561-1343661 (+)yybP-ykoY1343757-1344540 (+)ykoY

LL3_01444Single gene

DOOR ID: 3521458		LL3_01444 (ykoY) View Structure
15 1357916-1358070 (-)SAM1356621-1357806 (-)mtnK

LL3_01458Operon

DOOR ID: 1009416		LL3_01457 (mtnA),
LL3_01458 (mtnK)		 View Structure
16 1360268-1360367 (+)SAM1360448-1361663 (+)mtnW

LL3_01461Operon

DOOR ID: 1009417		LL3_01461 (mtnW),
LL3_01462 (mtnX),
LL3_01463 (mtnB),
LL3_01464 (mtnD)		 View Structure
17 1373072-1373116 (+)PreQ11373189-1373873 (+)ykvJ

LL3_01476Operon

DOOR ID: 1009420		LL3_01476 (ykvJ),
LL3_01477 (queD),
LL3_01478 (queE),
LL3_01479 (queF),
LL3_01480		 View Structure
18 1567918-1568023 (+)TPP1568095-1569376 (+)thiQ

LL3_01692Operon

DOOR ID: 1009459		LL3_01692 (thiQ),
LL3_01693		 View Structure
19 1590588-1590692 (+)SAM1590818-1591520 (+)cysH

LL3_01716Operon

DOOR ID: 1009463		LL3_01707 (pyrB),
LL3_01708 (pyrC),
LL3_01709 (pyrA),
LL3_01710 (pyrA),
LL3_01711 (pyrK),
LL3_01712 (pyrD),
LL3_01713 (pyrF),
LL3_01714 (pyrE),
LL3_01715,
LL3_01716 (cysH),
LL3_01717 (cysP),
LL3_01718 (sat),
LL3_01719 (cysC)		 View Structure
20 2025072-2025164 (-)SAM2023948-2024950 (-)yoaD

LL3_02066Operon

DOOR ID: 1009534		LL3_02064,
LL3_02065 (yoaC),
LL3_02066 (yoaD)		 View Structure
21 2280397-2280496 (-)purine2279714-2280299 (-)xpt

LL3_02393Operon

DOOR ID: 1009600		LL3_02392 (pbuX),
LL3_02393 (xpt)		 View Structure
22 2366604-2366738 (-)FMN2365884-2366457 (-)ribU

LL3_02490Operon

DOOR ID: 1009618		LL3_02490 (ribU),
LL3_02491		 View Structure
23 2386574-2386721 (-)FMN2385326-2386442 (-)ribD

LL3_02512Operon

DOOR ID: 1009623		LL3_02509 (ribH),
LL3_02510 (ribA),
LL3_02511 (ribE),
LL3_02512 (ribD),
LL3_02513,
LL3_02514		 View Structure
24 2502090-2502190 (-)glycine2500810-2501911 (-)gcvT

LL3_02653Operon

DOOR ID: 1009654		LL3_02651 (gcvP),
LL3_02652 (gcvP),
LL3_02653 (gcvT)		 View Structure
25 2749700-2749879 (-)lysine2748344-2749574 (-)lysC

LL3_02935Single gene

DOOR ID: 3521946		LL3_02935 (lysC) View Structure
26 2944323-2944461 (-)SAM2942950-2944153 (-)metK

LL3_03134Single gene

DOOR ID: 3522027		LL3_03134 (metK) View Structure
27 2973549-2973649 (+)TPP2973747-2974329 (+)thiT

LL3_03163Single gene

DOOR ID: 3522041		LL3_03163 (thiT) View Structure
28 3189428-3189534 (-)SAM3188296-3189322 (-)metQ

LL3_03394Operon

DOOR ID: 1009813		LL3_03392 (metN),
LL3_03393 (metP),
LL3_03394 (metQ)		 View Structure
29 3244486-3244666 (-)lysine3242964-3244377 (-)lysP

LL3_03457Single gene

DOOR ID: 3522154		LL3_03457 (lysP) View Structure
30 3786071-3786172 (-)ykkC-yxkD3785167-3786004 (-)yxkD

LL3_04036Single gene

DOOR ID: 3522345		LL3_04036 (yxkD) View Structure
31 3790973-3791059 (+)SAM3791137-3792274 (+)yxjG

LL3_04045Single gene

DOOR ID: 3522350		LL3_04045 (yxjG) View Structure
32 3793553-3793653 (+)purine3793788-3794982 (+)nupG

LL3_04048Single gene

DOOR ID: 3522353		LL3_04048 (nupG) View Structure
33 3883583-3883663 (-)glycine3882085-3883438 (-)ydgF

LL3_04131Single gene

DOOR ID: 3522386		LL3_04131 (ydgF) View Structure