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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
853231-853439
(-)
ydaO-yuaA
852422-853217 (-)
OCU_08710
OCU_08710
Single gene
DOOR ID:
3449142
OCU_08710
View Structure
2
1164289-1164557
(-)
cobalamin
1161867-1164138 (-)
OCU_11640
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
OCU_11640
Single gene
DOOR ID:
3449256
OCU_11640
View Structure
3
1241767-1241949
(-)
cobalamin
1239955-1241632 (-)
OCU_12330
PPE family protein
OCU_12330
Single gene
DOOR ID:
3449281
OCU_12330
View Structure
4
2492458-2492549
(+)
SAH
2492557-2496352 (+)
OCU_23690
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
OCU_23690
Single gene
DOOR ID:
3449676
OCU_23690
View Structure
5
2833097-2833194
(-)
glycine
2830094-2832917 (-)
OCU_27030
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
OCU_27030
Single gene
DOOR ID:
3449807
OCU_27030
View Structure
6
2860935-2861109
(-)
ykoK
2860510-2860630 (-)
OCU_27320
OCU_27320
Operon
DOOR ID:
1230333
OCU_27310,
OCU_27320
View Structure
7
3270802-3270983
(-)
ykoK
3270267-3270513 (-)
OCU_30730
OCU_30730
Single gene
DOOR ID:
3449931
OCU_30730
View Structure
8
4395124-4395186
(+)
ykkC-III
4395199-4395514 (+)
OCU_41660
OCU_41660
single gene
DOOR ID:
3450282
OCU_41660
View Structure
9
4402270-4402386
(+)
SAM-IV
4402564-4403953 (+)
OCU_41720
O-acetylhomoserine aminocarboxypropyltransferase
OCU_41720
Operon
DOOR ID:
1230658
OCU_41720,
OCU_41730,
OCU_41740,
OCU_41750
View Structure
10
4836718-4836828
(+)
TPP
4836855-4838460 (+)
OCU_46070
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
OCU_46070
Operon
DOOR ID:
1230761
OCU_46070,
OCU_46080
View Structure
11
4859773-4859891
(-)
TPP
4858542-4858752 (-)
OCU_46300
Sulfur carrier protein ThiS
OCU_46300
Operon
DOOR ID:
1230767
OCU_46280,
OCU_46290,
OCU_46300,
OCU_46310
View Structure
12
5262081-5262253
(-)
ykoK
5261615-5261774 (-)
OCU_50210
OCU_50210
Operon
DOOR ID:
1230848
OCU_50200,
OCU_50210
View Structure
Genome:
Mycobacterium intracellulare ATCC 13950
(
NC_016946.1
);
Phylum:
Actinobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"853231-853439";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"852422-853217";i:10;s:1:"-";i:11;s:9:"OCU_08710";i:12;s:0:"";i:13;s:9:"OCU_08710";i:14;s:11:"Single gene";i:15;s:7:"3449142";i:16;s:9:"OCU_08710";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1164289-1164557";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1161867-1164138";i:10;s:1:"-";i:11;s:9:"OCU_11640";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"OCU_11640";i:14;s:11:"Single gene";i:15;s:7:"3449256";i:16;s:9:"OCU_11640";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1241767-1241949";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1239955-1241632";i:10;s:1:"-";i:11;s:9:"OCU_12330";i:12;s:18:"PPE family protein";i:13;s:9:"OCU_12330";i:14;s:11:"Single gene";i:15;s:7:"3449281";i:16;s:9:"OCU_12330";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2492458-2492549";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2492557-2496352";i:10;s:1:"+";i:11;s:9:"OCU_23690";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"OCU_23690";i:14;s:11:"Single gene";i:15;s:7:"3449676";i:16;s:9:"OCU_23690";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2833097-2833194";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2830094-2832917";i:10;s:1:"-";i:11;s:9:"OCU_27030";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"OCU_27030";i:14;s:11:"Single gene";i:15;s:7:"3449807";i:16;s:9:"OCU_27030";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2860935-2861109";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2860510-2860630";i:10;s:1:"-";i:11;s:9:"OCU_27320";i:12;s:0:"";i:13;s:9:"OCU_27320";i:14;s:6:"Operon";i:15;s:7:"1230333";i:16;s:19:"OCU_27310;OCU_27320";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3270802-3270983";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"3270267-3270513";i:10;s:1:"-";i:11;s:9:"OCU_30730";i:12;s:0:"";i:13;s:9:"OCU_30730";i:14;s:11:"Single gene";i:15;s:7:"3449931";i:16;s:9:"OCU_30730";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4395124-4395186";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"4395199-4395514";i:10;s:1:"+";i:11;s:9:"OCU_41660";i:12;s:0:"";i:13;s:9:"OCU_41660";i:14;s:11:"single gene";i:15;s:7:"3450282";i:16;s:9:"OCU_41660";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4402270-4402386";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4402564-4403953";i:10;s:1:"+";i:11;s:9:"OCU_41720";i:12;s:48:"O-acetylhomoserine aminocarboxypropyltransferase";i:13;s:9:"OCU_41720";i:14;s:6:"Operon";i:15;s:7:"1230658";i:16;s:39:"OCU_41720;OCU_41730;OCU_41740;OCU_41750";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4836718-4836828";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4836855-4838460";i:10;s:1:"+";i:11;s:9:"OCU_46070";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"OCU_46070";i:14;s:6:"Operon";i:15;s:7:"1230761";i:16;s:19:"OCU_46070;OCU_46080";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4859773-4859891";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4858542-4858752";i:10;s:1:"-";i:11;s:9:"OCU_46300";i:12;s:27:"Sulfur carrier protein ThiS";i:13;s:9:"OCU_46300";i:14;s:6:"Operon";i:15;s:7:"1230767";i:16;s:39:"OCU_46280;OCU_46290;OCU_46300;OCU_46310";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_016946.1";i:2;s:40:"Mycobacterium intracellulare ATCC 13950 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5262081-5262253";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"5261615-5261774";i:10;s:1:"-";i:11;s:9:"OCU_50210";i:12;s:0:"";i:13;s:9:"OCU_50210";i:14;s:6:"Operon";i:15;s:7:"1230848";i:16;s:19:"OCU_50200;OCU_50210";i:17;s:0:"";i:18;s:15:"View Structure ";}}
