About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
994914-995046
(+)
SAH
995065-996472 (+)
Acife_0971
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Acife_0971
Operon
DOOR ID:
912289
Acife_0971,
Acife_0972
View Structure
2
1707186-1707280
(-)
glycine
1705894-1706896 (+)
Acife_1710
NAD-dependent epimerase/dehydratase
Acife_1710
Operon
DOOR ID:
912450
Acife_1709,
Acife_1710,
Acife_1711
View Structure
3
1791542-1791635
(-)
TPP
1789580-1791464 (-)
Acife_1805
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Acife_1805
Single gene
DOOR ID:
3249926
Acife_1805
View Structure
Genome:
Acidithiobacillus ferrivorans SS3
(
NC_015942.1
);
Phylum:
Acidithiobacillia
a:4:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015942.1";i:2;s:34:"Acidithiobacillus ferrivorans SS3 ";i:3;s:17:"Acidithiobacillia";i:4;s:7:"1807140";i:5;s:13:"994914-995046";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"995065-996472";i:10;s:1:"+";i:11;s:10:"Acife_0971";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:10:"Acife_0971";i:14;s:6:"Operon";i:15;s:6:"912289";i:16;s:21:"Acife_0971;Acife_0972";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015942.1";i:2;s:34:"Acidithiobacillus ferrivorans SS3 ";i:3;s:17:"Acidithiobacillia";i:4;s:7:"1807140";i:5;s:15:"1707186-1707280";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1705894-1706896";i:10;s:1:"+";i:11;s:10:"Acife_1710";i:12;s:35:"NAD-dependent epimerase/dehydratase";i:13;s:10:"Acife_1710";i:14;s:6:"Operon";i:15;s:6:"912450";i:16;s:32:"Acife_1709;Acife_1710;Acife_1711";i:17;s:43:"carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015942.1";i:2;s:34:"Acidithiobacillus ferrivorans SS3 ";i:3;s:17:"Acidithiobacillia";i:4;s:7:"1807140";i:5;s:15:"1791542-1791635";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1789580-1791464";i:10;s:1:"-";i:11;s:10:"Acife_1805";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Acife_1805";i:14;s:11:"Single gene";i:15;s:7:"3249926";i:16;s:10:"Acife_1805";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
