RiboswitchDB

Genome: Candidatus Arthromitus sp. SFB-mouse-Japan (NC_015913.1); Phylum: Firmicutes

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

394873-395061 (+)

cobalamin

395202-396075 (+)

SFBM_0359

Iron compound ABC transporter; iron-binding protein

Operon

DOOR ID: 909649

SFBM_0359,
SFBM_0360 (FecD),
SFBM_0361 (fhuC),
SFBM_0362

2

688566-688667 (+)

purine

688795-690094 (+)

SFBM_0639

Xanthine/uracil/vitamin C permease

Operon

DOOR ID: 909703

SFBM_0639,
SFBM_0640

3

1421990-1422095 (-)

TPP

1421321-1421918 (-)

SFBM_1315

Thiamin transporter

Single gene

DOOR ID: 3245945

SFBM_1315

a:4:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015913.1";i:2;s:42:"Candidatus Arthromitus sp. SFB-mouse-Japan";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"394873-395061";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"395202-396075";i:10;s:1:"+";i:11;s:9:"SFBM_0359";i:12;s:51:"Iron compound ABC transporter; iron-binding protein";i:13;s:9:"SFBM_0359";i:14;s:6:"Operon";i:15;s:6:"909649";i:16;s:51:"SFBM_0359;SFBM_0360(FecD);SFBM_0361(fhuC);SFBM_0362";i:17;s:0:"";i:18;s:15:"View Structure
";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015913.1";i:2;s:42:"Candidatus Arthromitus sp. SFB-mouse-Japan";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"688566-688667";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"688795-690094";i:10;s:1:"+";i:11;s:9:"SFBM_0639";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:9:"SFBM_0639";i:14;s:6:"Operon";i:15;s:6:"909703";i:16;s:19:"SFBM_0639;SFBM_0640";i:17;s:0:"";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015913.1";i:2;s:42:"Candidatus Arthromitus sp. SFB-mouse-Japan";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1421990-1422095";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1421321-1421918";i:10;s:1:"-";i:11;s:9:"SFBM_1315";i:12;s:19:"Thiamin transporter";i:13;s:9:"SFBM_1315";i:14;s:11:"Single gene";i:15;s:7:"3245945";i:16;s:9:"SFBM_1315";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure
";}}