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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
841608-841715
(+)
TPP
841811-843734 (+)
CFU_0715
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CFU_0715
Single gene
DOOR ID:
3238941
CFU_0715
View Structure
2
3605103-3605284
(+)
SAH
3605983-3606694 (-)
lolD
Lipoprotein-releasing system ATP-binding protein LolD
CFU_3067
Operon
DOOR ID:
906434
CFU_3067
(lolD)
,
CFU_3068
View Structure
3
3763333-3763387
(-)
mini-ykkC
3762611-3762998 (+)
CFU_3210
CFU_3210
Operon
DOOR ID:
906462
CFU_3209,
CFU_3210
View Structure
4
3764947-3765123
(-)
yybP-ykoY
3763816-3764842 (-)
CFU_3213
Putative Ca2+/Na+ antiporter
CFU_3213
Single gene
DOOR ID:
3239828
CFU_3213
View Structure
5
3974782-3974907
(-)
ZMP-ZTP
3973447-3974707 (-)
glyA2
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
CFU_3400
Single gene
DOOR ID:
3239907
CFU_3400
(glyA2)
View Structure
6
4076395-4076629
(-)
cobalamin
4074422-4076300 (-)
btuB
Outer membrane vitamin B12 receptor BtuB
CFU_3488
Operon
DOOR ID:
906521
CFU_3486,
CFU_3487
(hmuU)
,
CFU_3488
(btuB)
View Structure
7
4724242-4724316
(-)
SAH
4722772-4724200 (-)
acyH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
CFU_4028
Operon
DOOR ID:
906632
CFU_4026
(metF)
,
CFU_4027
(yvlD)
,
CFU_4028
(acyH)
View Structure
8
4767895-4768063
(-)
FMN
4767215-4767863 (-)
ribH2
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
CFU_4069
Single gene
DOOR ID:
3240161
CFU_4069
(ribH2)
View Structure
9
4924999-4925097
(-)
fluoride
4923663-4924890 (-)
eriC
Chloride channel protein
CFU_4221
Single gene
DOOR ID:
3240211
CFU_4221
(eriC)
View Structure
Genome:
Collimonas fungivorans Ter331
(
NC_015856.1
);
Phylum:
Betaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015856.1";i:2;s:30:"Collimonas fungivorans Ter331 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3605103-3605284";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3605983-3606694";i:10;s:1:"-";i:11;s:4:"lolD";i:12;s:54:"Lipoprotein-releasing system ATP-binding protein LolD ";i:13;s:8:"CFU_3067";i:14;s:6:"Operon";i:15;s:6:"906434";i:16;s:23:"CFU_3067(lolD);CFU_3068";i:17;s:49:"lipoprotein localization to membrane [GO:0044873]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015856.1";i:2;s:30:"Collimonas fungivorans Ter331 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3763333-3763387";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3762611-3762998";i:10;s:1:"+";i:11;s:8:"CFU_3210";i:12;s:0:"";i:13;s:8:"CFU_3210";i:14;s:6:"Operon";i:15;s:6:"906462";i:16;s:17:"CFU_3209;CFU_3210";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015856.1";i:2;s:30:"Collimonas fungivorans Ter331 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3764947-3765123";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3763816-3764842";i:10;s:1:"-";i:11;s:8:"CFU_3213";i:12;s:28:"Putative Ca2+/Na+ antiporter";i:13;s:8:"CFU_3213";i:14;s:11:"Single gene";i:15;s:7:"3239828";i:16;s:8:"CFU_3213";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015856.1";i:2;s:30:"Collimonas fungivorans Ter331 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3974782-3974907";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3973447-3974707";i:10;s:1:"-";i:11;s:5:"glyA2";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:8:"CFU_3400";i:14;s:11:"Single gene";i:15;s:7:"3239907";i:16;s:15:"CFU_3400(glyA2)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015856.1";i:2;s:30:"Collimonas fungivorans Ter331 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4076395-4076629";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4074422-4076300";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:40:"Outer membrane vitamin B12 receptor BtuB";i:13;s:8:"CFU_3488";i:14;s:6:"Operon";i:15;s:6:"906521";i:16;s:38:"CFU_3486;CFU_3487(hmuU);CFU_3488(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015856.1";i:2;s:30:"Collimonas fungivorans Ter331 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4724242-4724316";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4722772-4724200";i:10;s:1:"-";i:11;s:4:"acyH";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:8:"CFU_4028";i:14;s:6:"Operon";i:15;s:6:"906632";i:16;s:44:"CFU_4026(metF);CFU_4027(yvlD);CFU_4028(acyH)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015856.1";i:2;s:30:"Collimonas fungivorans Ter331 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4767895-4768063";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"4767215-4767863";i:10;s:1:"-";i:11;s:5:"ribH2";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:8:"CFU_4069";i:14;s:11:"Single gene";i:15;s:7:"3240161";i:16;s:15:"CFU_4069(ribH2)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015856.1";i:2;s:30:"Collimonas fungivorans Ter331 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4924999-4925097";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"4923663-4924890";i:10;s:1:"-";i:11;s:4:"eriC";i:12;s:24:"Chloride channel protein";i:13;s:8:"CFU_4221";i:14;s:11:"Single gene";i:15;s:7:"3240211";i:16;s:14:"CFU_4221(eriC)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
