About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
145014-145086
(+)
fluoride
145104-145317 (+)
MLP_01340
MLP_01340
Single gene
DOOR ID:
3173911
MLP_01340
View Structure
2
1654165-1654294
(+)
FMN
1654429-1655479 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
MLP_15280
Operon
DOOR ID:
872651
MLP_15280
(ribD)
,
MLP_15290
(ribE)
,
MLP_15300
(ribB)
,
MLP_15310
(ribH)
View Structure
3
2553269-2553369
(+)
glycine
2553420-2556279 (+)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
MLP_23880
Single gene
DOOR ID:
3174644
MLP_23880
(gcvP)
View Structure
4
2622898-2623107
(-)
cobalamin
2620390-2622757 (-)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MLP_24460
Single gene
DOOR ID:
3174664
MLP_24460
(metE)
View Structure
5
2651680-2651743
(+)
ykkC-III
2651754-2652069 (+)
MLP_24740
MLP_24740
single gene
DOOR ID:
3174670
MLP_24740
View Structure
6
3625086-3625313
(-)
cobalamin
3622315-3624946 (-)
nrdA
Ribonucleoside-diphosphate reductase
MLP_33650
Operon
DOOR ID:
873078
MLP_33630,
MLP_33640
(nrdB)
,
MLP_33650
(nrdA)
View Structure
7
4277444-4277518
(+)
fluoride
4277536-4278052 (+)
MLP_39740
MLP_39740
Operon
DOOR ID:
873221
MLP_39740,
MLP_39750,
MLP_39760
View Structure
8
4560553-4560639
(-)
SAH
4558610-4559138 (+)
MLP_42580
MLP_42580
Single gene
DOOR ID:
3175244
MLP_42580
View Structure
9
4770910-4770986
(-)
ZMP-ZTP
4768886-4769894 (+)
MLP_44660
MLP_44660
Operon
DOOR ID:
873337
MLP_44650,
MLP_44660
View Structure
10
4999406-4999519
(-)
SAM
4998116-4999397 (-)
thrC
Threonine synthase
MLP_46930
Operon
DOOR ID:
873390
MLP_46920
(cysO)
,
MLP_46930
(thrC)
View Structure
11
5031551-5031678
(-)
FMN
5030686-5031451 (-)
MLP_47260
Putative ABC transporter permease protein
MLP_47260
Single gene
DOOR ID:
3175415
MLP_47260
View Structure
12
5084026-5084138
(+)
SAM-IV
5084326-5084839 (+)
MLP_47820
Putative cysteine dioxygenase
MLP_47820
Operon
DOOR ID:
873409
MLP_47820,
MLP_47830
View Structure
13
5467767-5467899
(-)
TPP
5465551-5466376 (-)
MLP_51360
Glycerophosphoryl diester phosphodiesterase (6)
MLP_51360
Operon
DOOR ID:
873487
MLP_51360,
MLP_51370
View Structure
Genome:
Microlunatus phosphovorus NM-1
(
NC_015635.1
);
Phylum:
Actinobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"145014-145086";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"145104-145317";i:10;s:1:"+";i:11;s:9:"MLP_01340";i:12;s:0:"";i:13;s:9:"MLP_01340";i:14;s:11:"Single gene";i:15;s:7:"3173911";i:16;s:9:"MLP_01340";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1654165-1654294";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1654429-1655479";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"MLP_15280";i:14;s:6:"Operon";i:15;s:6:"872651";i:16;s:63:"MLP_15280(ribD);MLP_15290(ribE);MLP_15300(ribB);MLP_15310(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2553269-2553369";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2553420-2556279";i:10;s:1:"+";i:11;s:4:"gcvP";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"MLP_23880";i:14;s:11:"Single gene";i:15;s:7:"3174644";i:16;s:15:"MLP_23880(gcvP)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2622898-2623107";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2620390-2622757";i:10;s:1:"-";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"MLP_24460";i:14;s:11:"Single gene";i:15;s:7:"3174664";i:16;s:15:"MLP_24460(metE)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2651680-2651743";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"2651754-2652069";i:10;s:1:"+";i:11;s:9:"MLP_24740";i:12;s:0:"";i:13;s:9:"MLP_24740";i:14;s:11:"single gene";i:15;s:7:"3174670";i:16;s:9:"MLP_24740";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3625086-3625313";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3622315-3624946";i:10;s:1:"-";i:11;s:4:"nrdA";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:9:"MLP_33650";i:14;s:6:"Operon";i:15;s:6:"873078";i:16;s:41:"MLP_33630;MLP_33640(nrdB);MLP_33650(nrdA)";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4277444-4277518";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"4277536-4278052";i:10;s:1:"+";i:11;s:9:"MLP_39740";i:12;s:0:"";i:13;s:9:"MLP_39740";i:14;s:6:"Operon";i:15;s:6:"873221";i:16;s:29:"MLP_39740;MLP_39750;MLP_39760";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4560553-4560639";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4558610-4559138";i:10;s:1:"+";i:11;s:9:"MLP_42580";i:12;s:0:"";i:13;s:9:"MLP_42580";i:14;s:11:"Single gene";i:15;s:7:"3175244";i:16;s:9:"MLP_42580";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4770910-4770986";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"4768886-4769894";i:10;s:1:"+";i:11;s:9:"MLP_44660";i:12;s:0:"";i:13;s:9:"MLP_44660";i:14;s:6:"Operon";i:15;s:6:"873337";i:16;s:19:"MLP_44650;MLP_44660";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4999406-4999519";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4998116-4999397";i:10;s:1:"-";i:11;s:4:"thrC";i:12;s:19:"Threonine synthase ";i:13;s:9:"MLP_46930";i:14;s:6:"Operon";i:15;s:6:"873390";i:16;s:31:"MLP_46920(cysO);MLP_46930(thrC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5031551-5031678";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5030686-5031451";i:10;s:1:"-";i:11;s:9:"MLP_47260";i:12;s:41:"Putative ABC transporter permease protein";i:13;s:9:"MLP_47260";i:14;s:11:"Single gene";i:15;s:7:"3175415";i:16;s:9:"MLP_47260";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5084026-5084138";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"5084326-5084839";i:10;s:1:"+";i:11;s:9:"MLP_47820";i:12;s:29:"Putative cysteine dioxygenase";i:13;s:9:"MLP_47820";i:14;s:6:"Operon";i:15;s:6:"873409";i:16;s:19:"MLP_47820;MLP_47830";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_015635.1";i:2;s:30:"Microlunatus phosphovorus NM-1";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5467767-5467899";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5465551-5466376";i:10;s:1:"-";i:11;s:9:"MLP_51360";i:12;s:47:"Glycerophosphoryl diester phosphodiesterase (6)";i:13;s:9:"MLP_51360";i:14;s:6:"Operon";i:15;s:6:"873487";i:16;s:19:"MLP_51360;MLP_51370";i:17;s:36:"lipid metabolic process [GO:0006629]";i:18;s:15:"View Structure ";}}
