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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79034-79260
(-)
cobalamin
77157-78987 (-)
VAA_00488
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VAA_00488
Operon
DOOR ID:
871182
VAA_00490,
VAA_00489,
VAA_00488
View Structure
2
206609-206721
(-)
yybP-ykoY
206242-206518 (-)
VAA_00857
Integral membrane protein
VAA_00857
Single gene
DOOR ID:
3171422
VAA_00857
View Structure
3
255154-255252
(+)
TPP
255256-257311 (+)
VAA_00204
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VAA_00204
Operon
DOOR ID:
871222
VAA_00204,
VAA_00205,
VAA_00206,
VAA_00207,
VAA_00208,
VAA_00209
View Structure
4
676279-676398
(+)
TPP
677470-679066 (+)
VAA_02730
ThiP
VAA_02730
Operon
DOOR ID:
871304
VAA_02727,
VAA_02728,
VAA_02729,
VAA_02730,
VAA_02731
View Structure
5
1730293-1730386
(-)
glycine
1728789-1730169 (-)
VAA_01787
Na(+)-linked D-alanine glycine permease
VAA_01787
Single gene
DOOR ID:
3171900
VAA_01787
View Structure
6
1996187-1996272
(+)
c-di-GMP-I
1996386-1996974 (+)
VAA_02172
TfoX
VAA_02172
single gene
DOOR ID:
3172007
VAA_02172
View Structure
7
2025228-2025411
(-)
lysine
2023509-2025120 (-)
VAA_02202
Na(+)/H(+) antiporter
VAA_02202
Operon
DOOR ID:
871549
VAA_02201,
VAA_02202
View Structure
8
2211188-2211331
(-)
MOCO
2209630-2210143 (-)
VAA_02381
Molybdenum cofactor biosynthesis protein B
VAA_02381
Operon
DOOR ID:
871580
VAA_02378,
VAA_02379,
VAA_02380,
VAA_02381,
VAA_02382
View Structure
9
2473205-2473315
(-)
TPP
2472246-2473104 (-)
VAA_00499
Phosphomethylpyrimidine kinase
VAA_00499
Single gene
DOOR ID:
3172188
VAA_00499
View Structure
10
2979087-2979262
(+)
lysine
2979371-2980724 (+)
VAA_01747
Aspartokinase
VAA_01747
Single gene
DOOR ID:
3172366
VAA_01747
View Structure
Genome:
Vibrio anguillarum 775 chromosome I
(
NC_015633.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015633.1";i:2;s:35:"Vibrio anguillarum 775 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"676279-676398";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"677470-679066";i:10;s:1:"+";i:11;s:9:"VAA_02730";i:12;s:4:"ThiP";i:13;s:9:"VAA_02730";i:14;s:6:"Operon";i:15;s:6:"871304";i:16;s:49:"VAA_02727;VAA_02728;VAA_02729;VAA_02730;VAA_02731";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015633.1";i:2;s:35:"Vibrio anguillarum 775 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1730293-1730386";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1728789-1730169";i:10;s:1:"-";i:11;s:9:"VAA_01787";i:12;s:39:"Na(+)-linked D-alanine glycine permease";i:13;s:9:"VAA_01787";i:14;s:11:"Single gene";i:15;s:7:"3171900";i:16;s:9:"VAA_01787";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015633.1";i:2;s:35:"Vibrio anguillarum 775 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1996187-1996272";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1996386-1996974";i:10;s:1:"+";i:11;s:9:"VAA_02172";i:12;s:4:"TfoX";i:13;s:9:"VAA_02172";i:14;s:11:"single gene";i:15;s:7:"3172007";i:16;s:9:"VAA_02172";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015633.1";i:2;s:35:"Vibrio anguillarum 775 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2025228-2025411";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2023509-2025120";i:10;s:1:"-";i:11;s:9:"VAA_02202";i:12;s:21:"Na(+)/H(+) antiporter";i:13;s:9:"VAA_02202";i:14;s:6:"Operon";i:15;s:6:"871549";i:16;s:19:"VAA_02201;VAA_02202";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015633.1";i:2;s:35:"Vibrio anguillarum 775 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2211188-2211331";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2209630-2210143";i:10;s:1:"-";i:11;s:9:"VAA_02381";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"VAA_02381";i:14;s:6:"Operon";i:15;s:6:"871580";i:16;s:49:"VAA_02378;VAA_02379;VAA_02380;VAA_02381;VAA_02382";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015633.1";i:2;s:35:"Vibrio anguillarum 775 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2473205-2473315";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2472246-2473104";i:10;s:1:"-";i:11;s:9:"VAA_00499";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:9:"VAA_00499";i:14;s:11:"Single gene";i:15;s:7:"3172188";i:16;s:9:"VAA_00499";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015633.1";i:2;s:35:"Vibrio anguillarum 775 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2979087-2979262";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2979371-2980724";i:10;s:1:"+";i:11;s:9:"VAA_01747";i:12;s:14:"Aspartokinase ";i:13;s:9:"VAA_01747";i:14;s:11:"Single gene";i:15;s:7:"3172366";i:16;s:9:"VAA_01747";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}
