Genome: Desulfotomaculum ruminis DSM 2154 (NC_015589.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 129431-129534 (+)TPP129621-130293 (+)Desru_0126

Thiamine pyrophosphokinase		Desru_0126Operon

DOOR ID: 867086		Desru_0126,
Desru_0127,
Desru_0128,
Desru_0129,
Desru_0130		 View Structure
2 133136-133233 (+)TPP133326-134142 (+)Desru_0131

Phosphomethylpyrimidine kinase		Desru_0131Operon

DOOR ID: 867087		Desru_0131,
Desru_0132,
Desru_0133,
Desru_0134,
Desru_0135,
Desru_0136,
Desru_0137,
Desru_0138		 View Structure
3 149358-149495 (+)ydaO-yuaA149498-150446 (+)Desru_0151

SCP-like extracellular		Desru_0151Single gene

DOOR ID: 3164061		Desru_0151 View Structure
4 166820-166932 (+)SAM167020-168220 (+)Desru_0171

Desru_0171Operon

DOOR ID: 867095		Desru_0171,
Desru_0172,
Desru_0173		 View Structure
5 369675-369826 (+)glmS369954-371784 (+)Desru_0370

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Desru_0370Single gene

DOOR ID: 3164118		Desru_0370 View Structure
6 419216-419334 (+)MOCO419576-419792 (+)Desru_0418

Desru_0418Single gene

DOOR ID: 3164136		Desru_0418 View Structure
7 419370-419489 (+)MOCO419576-419792 (+)Desru_0418

Desru_0418Single gene

DOOR ID: 3164136		Desru_0418 View Structure
8 448094-448279 (+)lysine448400-449204 (+)Desru_0442

Extracellular solute-binding protein family 3		Desru_0442Operon

DOOR ID: 867151		Desru_0442,
Desru_0443,
Desru_0444		 View Structure
9 535057-535180 (-)MOCO534048-534939 (-)Desru_0520

ABC-type tungstate transport system; permease component		Desru_0520Operon

DOOR ID: 867165		Desru_0519,
Desru_0520		 View Structure
10 535514-535630 (+)MOCO535698-536724 (+)Desru_0521

Molybdopterin binding domain protein		Desru_0521Operon

DOOR ID: 867166		Desru_0521,
Desru_0522,
Desru_0523,
Desru_0524,
Desru_0525,
Desru_0526,
Desru_0527,
Desru_0528,
Desru_0529,
Desru_0530,
Desru_0531,
Desru_0532		 View Structure
11 549135-549277 (+)MOCO549378-549993 (+)Desru_0533

Phosphoglycerate mutase		Desru_0533Operon

DOOR ID: 867167		Desru_0533,
Desru_0534,
Desru_0535		 View Structure
12 551304-551434 (+)MOCO551611-552415 (+)Desru_0536

Molybdenum ABC transporter; periplasmic molybdate-binding protein		Desru_0536Operon

DOOR ID: 867168		Desru_0536,
Desru_0537,
Desru_0538		 View Structure
13 553892-554010 (+)MOCO554241-554634 (+)Desru_0539

Desru_0539Operon

DOOR ID: 867169		Desru_0539,
Desru_0540,
Desru_0541		 View Structure
14 554046-554165 (+)MOCO554241-554634 (+)Desru_0539

Desru_0539Operon

DOOR ID: 867169		Desru_0539,
Desru_0540,
Desru_0541		 View Structure
15 577093-577221 (+)ydaO-yuaA577308-579195 (+)Desru_0563

Amino acid transporter		Desru_0563Operon

DOOR ID: 867175		Desru_0563,
Desru_0564		 View Structure
16 668076-668160 (-)c-di-GMP-I667827-668013 (-)Desru_0636

Uncharacterized protein		Desru_0636single gene

DOOR ID: 3164228		Desru_0636 View Structure
17 866648-866803 (-)ydaO-yuaA865819-866641 (-)Desru_0837

Cell wall hydrolase SleB		Desru_0837Single gene

DOOR ID: 3164304		Desru_0837 View Structure
18 896512-896646 (+)ydaO-yuaA896652-897303 (+)Desru_0867

NLP/P60 protein		Desru_0867Single gene

DOOR ID: 3164322		Desru_0867 View Structure
19 911541-911732 (+)cobalamin911810-914105 (+)Desru_0884

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		Desru_0884Operon

DOOR ID: 867231		Desru_0884,
Desru_0885		 View Structure
20 919055-919237 (-)cobalamin918119-918944 (-)Desru_0889

Sirohydrochlorin cobaltochelatase 		Desru_0889Operon

DOOR ID: 867232		Desru_0888,
Desru_0889		 View Structure
21 919379-919559 (+)cobalamin919626-920685 (+)Desru_0890

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Desru_0890Single gene

DOOR ID: 3164329		Desru_0890 View Structure
22 1297690-1297789 (+)purine1298042-1299419 (+)Desru_1275

Xanthine/uracil/vitamin C permease		Desru_1275Operon

DOOR ID: 867305		Desru_1275,
Desru_1276,
Desru_1277,
Desru_1278		 View Structure
23 1297776-1297875 (+)ykkC-yxkD1298042-1299419 (+)Desru_1275

Xanthine/uracil/vitamin C permease		Desru_1275Operon

DOOR ID: 867305		Desru_1275,
Desru_1276,
Desru_1277,
Desru_1278		 View Structure
24 1388196-1388363 (-)ykoK1387032-1388001 (-)Desru_1368

Magnesium transport protein CorA		Desru_1368Single gene

DOOR ID: 3164457		Desru_1368 View Structure
25 1569362-1569471 (+)SAM1569586-1570279 (+)Desru_1546

Vitamin B12 dependent methionine synthase activation region		Desru_1546Operon

DOOR ID: 867355		Desru_1546,
Desru_1547,
Desru_1548,
Desru_1549,
Desru_1550		 View Structure
26 1613996-1614085 (-)c-di-GMP-I1612882-1613809 (+)Desru_1588

Uncharacterized protein		Desru_1588single gene

DOOR ID: 3164537		Desru_1588 View Structure
27 1665227-1665357 (+)ydaO-yuaA1665363-1666626 (+)Desru_1637

Lysine 2;3-aminomutase YodO family protein 		Desru_1637Single gene

DOOR ID: 3164556		Desru_1637 View Structure
28 1715932-1716038 (-)ykkC-yxkD1715424-1715865 (-)Desru_1687

NUDIX hydrolase		Desru_1687Single gene

DOOR ID: 3164577		Desru_1687 View Structure
29 1733479-1733606 (+)FMN1733711-1734845 (+)Desru_1706

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Desru_1706Operon

DOOR ID: 867389		Desru_1706,
Desru_1707,
Desru_1708,
Desru_1709		 View Structure
30 1842762-1842846 (-)c-di-GMP-I1840971-1842591 (-)Desru_1824

Chemotaxis sensory transducer		Desru_1824single gene

DOOR ID: 3164607		Desru_1824 View Structure
31 1846381-1846488 (+)SAM1846557-1847841 (+)Desru_1829

O-acetylhomoserine/O-acetylserine sulfhydrylase (7)		Desru_1829Operon

DOOR ID: 867412		Desru_1827,
Desru_1828,
Desru_1829,
Desru_1830		 View Structure
32 2175115-2175200 (-)ZMP-ZTP2172818-2175050 (-)Desru_2158

Formate acetyltransferase (4)		Desru_2158Single gene

DOOR ID: 3164719		Desru_2158 View Structure
33 2266656-2266753 (+)ykkC-yxkD2266806-2267151 (+)Desru_2243

Small multidrug resistance protein		Desru_2243Operon

DOOR ID: 867487		Desru_2243,
Desru_2244		 View Structure
34 2804174-2804321 (-)FMN2803415-2804057 (-)Desru_2734

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		Desru_2734Single gene

DOOR ID: 3164974		Desru_2734 View Structure
35 3171704-3171783 (-)c-di-GMP-I3170403-3171645 (-)Desru_3110

Type II secretion system F domain protein		Desru_3110single gene

DOOR ID: 3165120		Desru_3110 View Structure
36 3181084-3181173 (+)c-di-GMP-I3181216-3181795 (+)Desru_3121

Metal-dependent phosphohydrolase HD sub domain protein		Desru_3121single gene

DOOR ID: 3165123		Desru_3121 View Structure
37 3244790-3244935 (-)ydaO-yuaA3243565-3244687 (-)Desru_3185

Glycine betaine/L-proline ABC transporter; ATPase subunit		Desru_3185Operon

DOOR ID: 867650		Desru_3182,
Desru_3183,
Desru_3184,
Desru_3185		 View Structure
38 3285570-3285732 (+)yybP-ykoY3285756-3286428 (+)Desru_3227

Desru_3227Single gene

DOOR ID: 3165164		Desru_3227 View Structure
39 3304611-3304795 (+)cobalamin3304905-3305781 (+)Desru_3249

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		Desru_3249Operon

DOOR ID: 867661		Desru_3249,
Desru_3250,
Desru_3251,
Desru_3252		 View Structure
40 3340284-3340387 (-)glycine3339002-3340097 (-)Desru_3283

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Desru_3283Operon

DOOR ID: 867667		Desru_3280,
Desru_3281,
Desru_3282,
Desru_3283		 View Structure
41 3466791-3466895 (-)glycine3465247-3466474 (-)Desru_3402

Serine hydroxymethyltransferase (SHMT) (Serine methylase) 		Desru_3402Operon

DOOR ID: 867694		Desru_3401,
Desru_3402		 View Structure
42 3531049-3531132 (-)c-di-GMP-I3530792-3530975 (-)Desru_3473

Uncharacterized protein		Desru_3473single gene

DOOR ID: 3165271		Desru_3473 View Structure
43 3693527-3693626 (-)SAM3692230-3693424 (-)Desru_3640

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Desru_3640Single gene

DOOR ID: 3165314		Desru_3640 View Structure