Genome: Methylomonas methanica MC09 (NC_015572.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 377169-377395 (-)cobalamin375241-377059 (-)Metme_0352

TonB-dependent receptor plug
Metme_0352Single gene

DOOR ID: 3153865
Metme_0352 View Structure
2 477526-477609 (+)c-di-GMP-I477679-478795 (+)Metme_0448

Uncharacterized protein
Metme_0448operon

DOOR ID: 861423
Metme_0448,
Metme_0449,
Metme_0450
View Structure
3 986079-986231 (+)c-di-GMP-I986267-987062 (+)Metme_0918

Uncharacterized protein
Metme_0918operon

DOOR ID: 861519
Metme_0918,
Metme_0919
View Structure
4 990642-990719 (+)c-di-GMP-I990757-1001173 (+)Metme_0921

Filamentous hemagglutinin family outer membrane protein
Metme_0921single gene

DOOR ID: 3154045
Metme_0921 View Structure
5 3052683-3052770 (-)c-di-GMP-I3051762-3052575 (-)Metme_2761

PEP motif putative anchor domain protein
Metme_2761operon

DOOR ID: 861903
Metme_2760,
Metme_2761
View Structure
6 3378022-3378100 (-)c-di-GMP-I3377179-3377926 (-)Metme_3044

Uncharacterized protein
Metme_3044operon

DOOR ID: 861961
Metme_3043,
Metme_3044
View Structure
7 3452024-3452241 (+)cobalamin3452357-3455150 (+)Metme_3119

Ribonucleoside-diphosphate reductase
Metme_3119Operon

DOOR ID: 861973
Metme_3119,
Metme_3120
View Structure
8 3678733-3678843 (+)TPP3678894-3680763 (+)Metme_3340

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Metme_3340Single gene

DOOR ID: 3154796
Metme_3340 View Structure
9 4651029-4651110 (-)c-di-GMP-I4650170-4650938 (-)Metme_4227

Uncharacterized protein
Metme_4227single gene

DOOR ID: 3155044
Metme_4227 View Structure
10 4842484-4842565 (-)c-di-GMP-I4841687-4842413 (-)Metme_4410

Uncharacterized protein
Metme_4410single gene

DOOR ID: 3155104
Metme_4410 View Structure