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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
286546-286669
(-)
TPP
284487-286431 (-)
SerAS9_0246
SerAS9_0246
Operon
DOOR ID:
1194886
SerAS9_0241,
SerAS9_0242,
SerAS9_0243,
SerAS9_0244,
SerAS9_0245,
SerAS9_0246
View Structure
2
399164-399208
(+)
mini-ykkC
399227-399545 (+)
SerAS9_0354
SerAS9_0354
Single gene
DOOR ID:
3150909
SerAS9_0354
View Structure
3
753033-753158
(-)
TPP
751990-752977 (-)
SerAS9_0671
SerAS9_0671
Operon
DOOR ID:
1194967
SerAS9_0669,
SerAS9_0670,
SerAS9_0671
View Structure
4
1273718-1273780
(-)
fluoride
1273256-1273640 (-)
SerAS9_1163
SerAS9_1163
Operon
DOOR ID:
1195053
SerAS9_1160,
SerAS9_1161,
SerAS9_1162,
SerAS9_1163
View Structure
5
1408843-1408986
(+)
MOCO
1410042-1410555 (+)
SerAS9_1288
SerAS9_1288
Operon
DOOR ID:
1195078
SerAS9_1287,
SerAS9_1288,
SerAS9_1289,
SerAS9_1290,
SerAS9_1291
View Structure
6
1996585-1996618
(+)
SAM-SAH
1996625-1999988 (-)
SerAS9_1843
SerAS9_1843
Single gene
DOOR ID:
3151569
SerAS9_1843
View Structure
7
2724718-2724891
(-)
ykoK
2723622-2724645 (-)
SerAS9_2532
SerAS9_2532
Single gene
DOOR ID:
3151884
SerAS9_2532
View Structure
8
3099693-3099880
(+)
yybP-ykoY
3099887-3100457 (+)
SerAS9_2913
SerAS9_2913
Single gene
DOOR ID:
3152044
SerAS9_2913
View Structure
9
3413419-3413521
(+)
TPP
3413583-3414264 (+)
SerAS9_3209
SerAS9_3209
Operon
DOOR ID:
1195420
SerAS9_3209,
SerAS9_3210,
SerAS9_3211,
SerAS9_3212
View Structure
10
4040952-4041043
(-)
TPP
4040120-4040915 (-)
SerAS9_3778
SerAS9_3778
Operon
DOOR ID:
1195522
SerAS9_3777,
SerAS9_3778
View Structure
11
4744197-4744358
(-)
FMN
4743430-4744084 (-)
SerAS9_4394
SerAS9_4394
Single gene
DOOR ID:
3152650
SerAS9_4394
View Structure
12
4950630-4950824
(+)
lysine
4950933-4952301 (+)
SerAS9_4581
SerAS9_4581
Single gene
DOOR ID:
3152722
SerAS9_4581
View Structure
13
5266482-5266695
(-)
cobalamin
5264521-5266414 (-)
SerAS9_4864
SerAS9_4864
Operon
DOOR ID:
1195747
SerAS9_4863,
SerAS9_4864
View Structure
Genome:
Serratia plymuthica AS9
(
NC_015567.1
);
Phylum:
Gammaproteobacteria
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