RiboswitchDB

Genome: Haliscomenobacter hydrossis DSM 1100 (NC_015510.1); Phylum: Bacteroidetes/Chlorobi group

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

2174213-2174436 (+)

cobalamin

2174526-2175093 (+)

Halhy_1731

Operon

DOOR ID: 849652

Halhy_1731,
Halhy_1732

2

2317470-2317697 (+)

cobalamin

2317746-2319801 (+)

Halhy_1838

TonB-dependent receptor plug

Single gene

DOOR ID: 3130328

Halhy_1838

3

5635595-5635687 (-)

TPP

5633037-5635455 (-)

Halhy_4451

TonB-dependent receptor

Single gene

DOOR ID: 3131557

Halhy_4451

4

7079516-7079696 (-)

SAM

7078396-7079503 (-)

Halhy_5551

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)

Single gene

DOOR ID: 3132048

Halhy_5551

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";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015510.1";i:2;s:37:"Haliscomenobacter hydrossis DSM 1100 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"5635595-5635687";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5633037-5635455";i:10;s:1:"-";i:11;s:10:"Halhy_4451";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"Halhy_4451";i:14;s:11:"Single gene";i:15;s:7:"3131557";i:16;s:10:"Halhy_4451";i:17;s:0:"";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015510.1";i:2;s:37:"Haliscomenobacter hydrossis DSM 1100 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"7079516-7079696";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"7078396-7079503";i:10;s:1:"-";i:11;s:10:"Halhy_5551";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:10:"Halhy_5551";i:14;s:11:"Single gene";i:15;s:7:"3132048";i:16;s:10:"Halhy_5551";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure
";}}