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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
639255-639360
(+)
TPP
639535-641425 (+)
PSEBR_a512
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PSEBR_a512
Single gene
DOOR ID:
3099569
PSEBR_a512
View Structure
2
1110769-1110889
(-)
yybP-ykoY
1110094-1110679 (-)
PSEBR_a864
PSEBR_a864
Single gene
DOOR ID:
3099721
PSEBR_a864
View Structure
3
1623629-1623675
(-)
mini-ykkC
1619957-1623587 (-)
PSEBR_a1318
PSEBR_a1318
Operon
DOOR ID:
831934
PSEBR_a1317,
PSEBR_a1318
View Structure
4
1627968-1628069
(-)
ykkC-yxkD
1626839-1627907 (-)
PSEBR_a1323
Putative ABC transporter; periplasmic component
PSEBR_a1323
Operon
DOOR ID:
831935
PSEBR_a1319,
PSEBR_a1320,
PSEBR_a1321,
PSEBR_a1322,
PSEBR_a1323
View Structure
5
2380978-2381201
(-)
cobalamin
2380689-2380878 (-)
PSEBR_a1952
Putative cobalt transporter; subunit CbtB
PSEBR_a1952
Operon
DOOR ID:
832060
PSEBR_a1950,
PSEBR_a1951,
PSEBR_a1952
View Structure
6
2381415-2381629
(+)
cobalamin
2381726-2382791 (+)
PSEBR_a1953
Cobalamin biosynthesis protein
PSEBR_a1953
Operon
DOOR ID:
832061
PSEBR_a1953,
PSEBR_a1954
View Structure
7
5144168-5144220
(+)
mini-ykkC
5144239-5144554 (+)
PSEBR_a4221
PSEBR_a4221
Single gene
DOOR ID:
3101239
PSEBR_a4221
View Structure
8
5170994-5171203
(-)
cobalamin
5170287-5170914 (-)
PSEBR_a4245
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
PSEBR_a4245
Operon
DOOR ID:
832545
PSEBR_a4243,
PSEBR_a4244,
PSEBR_a4245
View Structure
9
5253209-5253378
(+)
FMN
5253478-5253988 (+)
PSEBR_a4312
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
PSEBR_a4312
Single gene
DOOR ID:
3101281
PSEBR_a4312
View Structure
10
6398872-6398979
(+)
SAH
6399002-6400412 (+)
PSEBR_a5283
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
PSEBR_a5283
Single gene
DOOR ID:
3101680
PSEBR_a5283
View Structure
Genome:
Pseudomonas brassicacearum subsp. brassicacearum NFM421
(
NC_015379.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015379.1";i:2;s:56:"Pseudomonas brassicacearum subsp. brassicacearum NFM421 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1110769-1110889";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1110094-1110679";i:10;s:1:"-";i:11;s:10:"PSEBR_a864";i:12;s:0:"";i:13;s:10:"PSEBR_a864";i:14;s:11:"Single gene";i:15;s:7:"3099721";i:16;s:10:"PSEBR_a864";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015379.1";i:2;s:56:"Pseudomonas brassicacearum subsp. brassicacearum NFM421 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1623629-1623675";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1619957-1623587";i:10;s:1:"-";i:11;s:11:"PSEBR_a1318";i:12;s:0:"";i:13;s:11:"PSEBR_a1318";i:14;s:6:"Operon";i:15;s:6:"831934";i:16;s:23:"PSEBR_a1317;PSEBR_a1318";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015379.1";i:2;s:56:"Pseudomonas brassicacearum subsp. brassicacearum NFM421 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1627968-1628069";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"1626839-1627907";i:10;s:1:"-";i:11;s:11:"PSEBR_a1323";i:12;s:47:"Putative ABC transporter; periplasmic component";i:13;s:11:"PSEBR_a1323";i:14;s:6:"Operon";i:15;s:6:"831935";i:16;s:59:"PSEBR_a1319;PSEBR_a1320;PSEBR_a1321;PSEBR_a1322;PSEBR_a1323";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015379.1";i:2;s:56:"Pseudomonas brassicacearum subsp. brassicacearum NFM421 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2380978-2381201";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2380689-2380878";i:10;s:1:"-";i:11;s:11:"PSEBR_a1952";i:12;s:41:"Putative cobalt transporter; subunit CbtB";i:13;s:11:"PSEBR_a1952";i:14;s:6:"Operon";i:15;s:6:"832060";i:16;s:35:"PSEBR_a1950;PSEBR_a1951;PSEBR_a1952";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015379.1";i:2;s:56:"Pseudomonas brassicacearum subsp. brassicacearum NFM421 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2381415-2381629";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2381726-2382791";i:10;s:1:"+";i:11;s:11:"PSEBR_a1953";i:12;s:30:"Cobalamin biosynthesis protein";i:13;s:11:"PSEBR_a1953";i:14;s:6:"Operon";i:15;s:6:"832061";i:16;s:23:"PSEBR_a1953;PSEBR_a1954";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015379.1";i:2;s:56:"Pseudomonas brassicacearum subsp. brassicacearum NFM421 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5144168-5144220";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5144239-5144554";i:10;s:1:"+";i:11;s:11:"PSEBR_a4221";i:12;s:0:"";i:13;s:11:"PSEBR_a4221";i:14;s:11:"Single gene";i:15;s:7:"3101239";i:16;s:11:"PSEBR_a4221";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015379.1";i:2;s:56:"Pseudomonas brassicacearum subsp. brassicacearum NFM421 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5170994-5171203";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5170287-5170914";i:10;s:1:"-";i:11;s:11:"PSEBR_a4245";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:11:"PSEBR_a4245";i:14;s:6:"Operon";i:15;s:6:"832545";i:16;s:35:"PSEBR_a4243;PSEBR_a4244;PSEBR_a4245";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_015379.1";i:2;s:56:"Pseudomonas brassicacearum subsp. brassicacearum NFM421 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5253209-5253378";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"5253478-5253988";i:10;s:1:"+";i:11;s:11:"PSEBR_a4312";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:11:"PSEBR_a4312";i:14;s:11:"Single gene";i:15;s:7:"3101281";i:16;s:11:"PSEBR_a4312";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_015379.1";i:2;s:56:"Pseudomonas brassicacearum subsp. brassicacearum NFM421 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"6398872-6398979";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"6399002-6400412";i:10;s:1:"+";i:11;s:11:"PSEBR_a5283";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:11:"PSEBR_a5283";i:14;s:11:"Single gene";i:15;s:7:"3101680";i:16;s:11:"PSEBR_a5283";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
