About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
663386-663561
(+)
FMN
663694-664348 (+)
Rahaq_0626
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Rahaq_0626
Single gene
DOOR ID:
3052381
Rahaq_0626
View Structure
2
1136869-1136967
(+)
TPP
1137001-1137811 (+)
Rahaq_1063
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Rahaq_1063
Operon
DOOR ID:
1193353
Rahaq_1063,
Rahaq_1064
View Structure
3
3340908-3341064
(-)
MOCO
3339387-3339900 (-)
Rahaq_3087
Molybdenum cofactor biosynthesis protein B
Rahaq_3087
Operon
DOOR ID:
1193716
Rahaq_3084,
Rahaq_3085,
Rahaq_3086,
Rahaq_3087,
Rahaq_3088
View Structure
4
3484812-3484874
(+)
fluoride
3484940-3485324 (+)
Rahaq_3222
Putative fluoride ion transporter CrcB
Rahaq_3222
Single gene
DOOR ID:
3053430
Rahaq_3222
View Structure
5
4074577-4074706
(+)
TPP
4074749-4075733 (+)
Rahaq_3754
Thiamine ABC transporter; periplasmic binding protein
Rahaq_3754
Operon
DOOR ID:
1193856
Rahaq_3754,
Rahaq_3755,
Rahaq_3756
View Structure
6
4461567-4461756
(+)
lysine
4461862-4463251 (+)
Rahaq_4101
Aspartokinase
Rahaq_4101
Single gene
DOOR ID:
3053780
Rahaq_4101
View Structure
7
4497538-4497664
(+)
TPP
4497786-4499751 (+)
Rahaq_4126
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Rahaq_4126
Operon
DOOR ID:
1193929
Rahaq_4126,
Rahaq_4127,
Rahaq_4128,
Rahaq_4129,
Rahaq_4130,
Rahaq_4131
View Structure
8
4694134-4694408
(-)
cobalamin
4692185-4694063 (-)
Rahaq_4287
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Rahaq_4287
Operon
DOOR ID:
1193963
Rahaq_4286,
Rahaq_4287
View Structure
Genome:
Rahnella sp. Y9602
(
NC_015061.1
);
Phylum:
Gammaproteobacteria
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_015061.1";i:2;s:19:"Rahnella sp. Y9602 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"663386-663561";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"663694-664348";i:10;s:1:"+";i:11;s:10:"Rahaq_0626";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"Rahaq_0626";i:14;s:11:"Single gene";i:15;s:7:"3052381";i:16;s:10:"Rahaq_0626";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_015061.1";i:2;s:19:"Rahnella sp. Y9602 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1136869-1136967";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1137001-1137811";i:10;s:1:"+";i:11;s:10:"Rahaq_1063";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"Rahaq_1063";i:14;s:6:"Operon";i:15;s:7:"1193353";i:16;s:21:"Rahaq_1063;Rahaq_1064";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_015061.1";i:2;s:19:"Rahnella sp. Y9602 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3340908-3341064";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3339387-3339900";i:10;s:1:"-";i:11;s:10:"Rahaq_3087";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"Rahaq_3087";i:14;s:6:"Operon";i:15;s:7:"1193716";i:16;s:54:"Rahaq_3084;Rahaq_3085;Rahaq_3086;Rahaq_3087;Rahaq_3088";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_015061.1";i:2;s:19:"Rahnella sp. Y9602 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3484812-3484874";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"3484940-3485324";i:10;s:1:"+";i:11;s:10:"Rahaq_3222";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:10:"Rahaq_3222";i:14;s:11:"Single gene";i:15;s:7:"3053430";i:16;s:10:"Rahaq_3222";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_015061.1";i:2;s:19:"Rahnella sp. Y9602 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4074577-4074706";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4074749-4075733";i:10;s:1:"+";i:11;s:10:"Rahaq_3754";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:10:"Rahaq_3754";i:14;s:6:"Operon";i:15;s:7:"1193856";i:16;s:32:"Rahaq_3754;Rahaq_3755;Rahaq_3756";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_015061.1";i:2;s:19:"Rahnella sp. Y9602 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4461567-4461756";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4461862-4463251";i:10;s:1:"+";i:11;s:10:"Rahaq_4101";i:12;s:14:"Aspartokinase ";i:13;s:10:"Rahaq_4101";i:14;s:11:"Single gene";i:15;s:7:"3053780";i:16;s:10:"Rahaq_4101";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_015061.1";i:2;s:19:"Rahnella sp. Y9602 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4497538-4497664";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4497786-4499751";i:10;s:1:"+";i:11;s:10:"Rahaq_4126";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Rahaq_4126";i:14;s:6:"Operon";i:15;s:7:"1193929";i:16;s:65:"Rahaq_4126;Rahaq_4127;Rahaq_4128;Rahaq_4129;Rahaq_4130;Rahaq_4131";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_015061.1";i:2;s:19:"Rahnella sp. Y9602 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4694134-4694408";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4692185-4694063";i:10;s:1:"-";i:11;s:10:"Rahaq_4287";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"Rahaq_4287";i:14;s:6:"Operon";i:15;s:7:"1193963";i:16;s:21:"Rahaq_4286;Rahaq_4287";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
