Genome: Alicycliphilus denitrificans BC (NC_014910.1); Phylum: Betaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 225367-225447 (+)SAH225476-228212 (+)Alide_0204

Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Alide_0204Single gene

DOOR ID: 3022759
Alide_0204 View Structure
2 737992-738074 (+)SAH738147-739578 (+)Alide_0702

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Alide_0702Single gene

DOOR ID: 3022876
Alide_0702 View Structure
3 1849241-1849343 (-)TPP1848082-1849201 (-)Alide_1785

Glycine oxidase ThiO
Alide_1785Operon

DOOR ID: 789296
Alide_1782,
Alide_1783,
Alide_1784,
Alide_1785
View Structure
4 1990607-1990768 (-)ZMP-ZTP1989325-1990570 (-)Alide_1929

Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Alide_1929Operon

DOOR ID: 789325
Alide_1928,
Alide_1929
View Structure
5 2409682-2409778 (+)glycine2409940-2411074 (+)Alide_2347

Glycine cleavage system T protein
Alide_2347Single gene

DOOR ID: 3023301
Alide_2347 View Structure
6 2409793-2409895 (+)glycine2409940-2411074 (+)Alide_2347

Glycine cleavage system T protein
Alide_2347Single gene

DOOR ID: 3023301
Alide_2347 View Structure
7 3460417-3460661 (-)cobalamin3458474-3460268 (-)Alide_3314

TonB-dependent receptor plug
Alide_3314Operon

DOOR ID: 789623
Alide_3308,
Alide_3309,
Alide_3310,
Alide_3311,
Alide_3312,
Alide_3313,
Alide_3314
View Structure
8 3842405-3842515 (-)TPP3840470-3842318 (-)Alide_3691

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Alide_3691Single gene

DOOR ID: 3023671
Alide_3691 View Structure
9 4606990-4607106 (-)yybP-ykoY4606304-4606883 (-)Alide_4392

Alide_4392Single gene

DOOR ID: 3023868
Alide_4392 View Structure