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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
130807-130980
(-)
lysine
129082-130696 (-)
LA2_00655
Putative glutamine ABC transporter
LA2_00655
Operon
DOOR ID:
771531
LA2_00650,
LA2_00655
View Structure
2
243212-243375
(+)
ykoK
243451-246115 (+)
LA2_01210
Cation transporter P-ATPase
LA2_01210
Single gene
DOOR ID:
2989893
LA2_01210
View Structure
3
270789-270886
(-)
purine
270136-270715 (-)
LA2_01335
Xanthine phosphoribosyltransferase (XPRTase) (2)
LA2_01335
Operon
DOOR ID:
771561
LA2_01330,
LA2_01335
View Structure
4
534526-534689
(+)
ykoK
534769-537457 (+)
LA2_02700
Magnesium-translocating P-type ATPase
LA2_02700
Single gene
DOOR ID:
2989985
LA2_02700
View Structure
5
609998-610090
(+)
TPP
610140-610719 (+)
LA2_03025
LA2_03025
Operon
DOOR ID:
771620
LA2_03025,
LA2_03030,
LA2_03035
View Structure
6
898123-898293
(+)
lysine
898384-899695 (+)
LA2_04470
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LA2_04470
Operon
DOOR ID:
771678
LA2_04470,
LA2_04475,
LA2_04480,
LA2_04485,
LA2_04490,
LA2_04495,
LA2_04500
View Structure
7
1002999-1003113
(+)
FMN
1003190-1003880 (+)
LA2_05025
Riboflavin transporter
LA2_05025
Single gene
DOOR ID:
2990147
LA2_05025
View Structure
8
1028499-1028557
(+)
fluoride
1028600-1028990 (+)
LA2_05155
Putative fluoride ion transporter CrcB
LA2_05155
Operon
DOOR ID:
771705
LA2_05155,
LA2_05160
View Structure
9
1739069-1739162
(-)
SMK_box
1736388-1737849 (-)
LA2_09135
Permease of the major facilitator superfamily protein
LA2_09135
Operon
DOOR ID:
771824
LA2_09135,
LA2_09140
View Structure
10
2044561-2044658
(+)
purine
2044730-2046041 (+)
LA2_10685
Xanthine/uracil/vitamin C permease
LA2_10685
Single gene
DOOR ID:
2990525
LA2_10685
View Structure
Genome:
Lactobacillus amylovorus GRL 1112
(
NC_014724.1
);
Phylum:
Firmicutes
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xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014724.1";i:2;s:34:"Lactobacillus amylovorus GRL 1112 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"534526-534689";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"534769-537457";i:10;s:1:"+";i:11;s:9:"LA2_02700";i:12;s:37:"Magnesium-translocating P-type ATPase";i:13;s:9:"LA2_02700";i:14;s:11:"Single gene";i:15;s:7:"2989985";i:16;s:9:"LA2_02700";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014724.1";i:2;s:34:"Lactobacillus amylovorus GRL 1112 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"609998-610090";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"610140-610719";i:10;s:1:"+";i:11;s:9:"LA2_03025";i:12;s:0:"";i:13;s:9:"LA2_03025";i:14;s:6:"Operon";i:15;s:6:"771620";i:16;s:29:"LA2_03025;LA2_03030;LA2_03035";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014724.1";i:2;s:34:"Lactobacillus amylovorus GRL 1112 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"898123-898293";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"898384-899695";i:10;s:1:"+";i:11;s:9:"LA2_04470";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"LA2_04470";i:14;s:6:"Operon";i:15;s:6:"771678";i:16;s:69:"LA2_04470;LA2_04475;LA2_04480;LA2_04485;LA2_04490;LA2_04495;LA2_04500";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014724.1";i:2;s:34:"Lactobacillus amylovorus GRL 1112 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1002999-1003113";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1003190-1003880";i:10;s:1:"+";i:11;s:9:"LA2_05025";i:12;s:22:"Riboflavin transporter";i:13;s:9:"LA2_05025";i:14;s:11:"Single gene";i:15;s:7:"2990147";i:16;s:9:"LA2_05025";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014724.1";i:2;s:34:"Lactobacillus amylovorus GRL 1112 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1028499-1028557";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1028600-1028990";i:10;s:1:"+";i:11;s:9:"LA2_05155";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"LA2_05155";i:14;s:6:"Operon";i:15;s:6:"771705";i:16;s:19:"LA2_05155;LA2_05160";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014724.1";i:2;s:34:"Lactobacillus amylovorus GRL 1112 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1739069-1739162";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1736388-1737849";i:10;s:1:"-";i:11;s:9:"LA2_09135";i:12;s:53:"Permease of the major facilitator superfamily protein";i:13;s:9:"LA2_09135";i:14;s:6:"Operon";i:15;s:6:"771824";i:16;s:19:"LA2_09135;LA2_09140";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014724.1";i:2;s:34:"Lactobacillus amylovorus GRL 1112 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2044561-2044658";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2044730-2046041";i:10;s:1:"+";i:11;s:9:"LA2_10685";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:9:"LA2_10685";i:14;s:11:"Single gene";i:15;s:7:"2990525";i:16;s:9:"LA2_10685";i:17;s:0:"";i:18;s:15:"View Structure ";}}
