Genome: Halanaerobium hydrogeniformans (NC_014654.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 299132-299215 (+)c-di-GMP-I299297-301958 (+)Halsa_0254

Uncharacterized protein		Halsa_0254operon

DOOR ID: 1313513		Halsa_0255,
Halsa_0254		 View Structure
2 314539-314628 (+)c-di-GMP-I314698-315589 (+)Halsa_0257

Diguanylate cyclase with PAS/PAC sensor		Halsa_0257single gene

DOOR ID: 2977597		Halsa_0257 View Structure
3 324795-325027 (+)cobalamin325125-326175 (+)Halsa_0267

Alcohol dehydrogenase GroES domain protein		Halsa_0267Operon

DOOR ID: 1313516		Halsa_0270,
Halsa_0269,
Halsa_0268,
Halsa_0267		 View Structure
4 765283-765451 (-)ykoK763761-765126 (-)Halsa_0666

Magnesium transporter MgtE		Halsa_0666Single gene

DOOR ID: 2977705		Halsa_0666 View Structure
5 813701-813808 (+)TPP813853-814390 (+)Halsa_0712

Proton-coupled thiamine transporter YuaJ		Halsa_0712Single gene

DOOR ID: 2977718		Halsa_0712 View Structure
6 814409-814510 (+)TPP814614-815115 (+)Halsa_0713

ThiW protein		Halsa_0713Single gene

DOOR ID: 2977719		Halsa_0713 View Structure
7 831247-831370 (+)MOCO831378-833184 (+)Halsa_0727

Aldehyde ferredoxin oxidoreductase 		Halsa_0727Operon

DOOR ID: 1313611		Halsa_0729,
Halsa_0728,
Halsa_0727		 View Structure
8 1093643-1093746 (+)SAM1093810-1095088 (+)Halsa_0960

O-acetylhomoserine/O-acetylserine sulfhydrylase (7)		Halsa_0960Operon

DOOR ID: 1313660		Halsa_0960,
Halsa_0961,
Halsa_0962		 View Structure
9 1188984-1189109 (+)ydaO-yuaA1189232-1191074 (+)Halsa_1053

Multi-sensor signal transduction histidine kinase		Halsa_1053Operon

DOOR ID: 1313677		Halsa_1053,
Halsa_1054,
Halsa_1055,
Halsa_1056,
Halsa_1057,
Halsa_1058		 View Structure
10 1296637-1296754 (+)FMN1296982-1298128 (+)Halsa_1150

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Halsa_1150Operon

DOOR ID: 1313696		Halsa_1150,
Halsa_1151,
Halsa_1152,
Halsa_1153		 View Structure
11 1331049-1331135 (+)c-di-GMP-II1331162-1332905 (+)Halsa_1176

Halsa_1176Single gene

DOOR ID: 2977840		Halsa_1176 View Structure
12 1378918-1379108 (+)lysine1379224-1380457 (+)Halsa_1218

Orn/DAP/Arg decarboxylase 2		Halsa_1218Operon

DOOR ID: 1313708		Halsa_1218,
Halsa_1219,
Halsa_1220,
Halsa_1221,
Halsa_1222		 View Structure
13 1529511-1529690 (-)cobalamin1527583-1529368 (-)Halsa_1357

TonB-dependent receptor		Halsa_1357Operon

DOOR ID: 1313733		Halsa_1354,
Halsa_1355,
Halsa_1356,
Halsa_1357		 View Structure
14 1650276-1650445 (-)ykoK1649411-1650134 (-)Halsa_1479

MgtC/SapB transporter		Halsa_1479Single gene

DOOR ID: 2977924		Halsa_1479 View Structure
15 1912169-1912272 (-)SAM1911129-1912017 (-)Halsa_1711

Methylenetetrahydrofolate reductase (0)		Halsa_1711Operon

DOOR ID: 1313801		Halsa_1709,
Halsa_1710,
Halsa_1711		 View Structure
16 2087654-2087823 (-)glmS2085766-2087596 (-)Halsa_1879

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Halsa_1879Single gene

DOOR ID: 2978010		Halsa_1879 View Structure
17 2160125-2160218 (-)THF2159511-2160054 (-)Halsa_1962

Signal transduction histidine kinase; LytS		Halsa_1962Single gene

DOOR ID: 2978015		Halsa_1962 View Structure
18 2244941-2245050 (-)SAM2243831-2244854 (-)Halsa_2035

Methionine import ATP-binding protein MetN 		Halsa_2035Operon

DOOR ID: 1313858		Halsa_2033,
Halsa_2034,
Halsa_2035		 View Structure
19 2308738-2308837 (-)purine2307158-2308472 (-)Halsa_2097

Xanthine/uracil/vitamin C permease		Halsa_2097Single gene

DOOR ID: 2978045		Halsa_2097 View Structure
20 2390032-2390154 (-)MOCO2389107-2389938 (-)Halsa_2175

Extracellular solute-binding protein family 1		Halsa_2175Operon

DOOR ID: 1313882		Halsa_2172,
Halsa_2173,
Halsa_2174,
Halsa_2175		 View Structure
21 2403479-2403696 (-)cobalamin2402367-2403375 (-)Halsa_2186

Periplasmic binding protein		Halsa_2186Operon

DOOR ID: 1313884		Halsa_2182,
Halsa_2183,
Halsa_2184,
Halsa_2185,
Halsa_2186		 View Structure
22 2423372-2423567 (-)cobalamin2421557-2423114 (-)Halsa_2206

Cobyric acid synthase		Halsa_2206Operon

DOOR ID: 1313886		Halsa_2193,
Halsa_2194,
Halsa_2195,
Halsa_2196,
Halsa_2197,
Halsa_2198,
Halsa_2199,
Halsa_2200,
Halsa_2201,
Halsa_2202,
Halsa_2203,
Halsa_2204,
Halsa_2205,
Halsa_2206		 View Structure
23 2456117-2456305 (-)cobalamin2452698-2455929 (-)Halsa_2240

Anaerobic ribonucleoside-triphosphate reductase		Halsa_2240Operon

DOOR ID: 1313892		Halsa_2239,
Halsa_2240		 View Structure
24 2476452-2476545 (-)ykkC-yxkD2475050-2476325 (-)Halsa_2254

Phosphoribosylamine--glycine ligase (3) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase)		Halsa_2254Operon

DOOR ID: 1313894		Halsa_2245,
Halsa_2246,
Halsa_2247,
Halsa_2248,
Halsa_2249,
Halsa_2250,
Halsa_2251,
Halsa_2252,
Halsa_2253,
Halsa_2254		 View Structure
25 2476529-2476630 (-)purine2475050-2476325 (-)Halsa_2254

Phosphoribosylamine--glycine ligase (3) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase)		Halsa_2254Operon

DOOR ID: 1313894		Halsa_2245,
Halsa_2246,
Halsa_2247,
Halsa_2248,
Halsa_2249,
Halsa_2250,
Halsa_2251,
Halsa_2252,
Halsa_2253,
Halsa_2254		 View Structure
26 2552413-2552502 (+)c-di-GMP-I2552610-2552883 (+)Halsa_2326

Transposase IS3/IS911 family protein		Halsa_2326operon

DOOR ID: 1313909		Halsa_2326,
Halsa_2327		 View Structure
27 2603074-2603159 (-)glycine2601851-2602946 (-)Halsa_2380

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Halsa_2380Operon

DOOR ID: 1313919		Halsa_2377,
Halsa_2378,
Halsa_2379,
Halsa_2380		 View Structure