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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
155415-155561
(+)
yybP-ykoY
155574-156153 (+)
EIO_0174
Putative manganese efflux pump MntP
EIO_0174
Single gene
DOOR ID:
2967166
EIO_0174
View Structure
2
616800-616950
(+)
FMN
617046-618021 (+)
EIO_0647
Riboflavin biosynthesis protein RibD
EIO_0647
Operon
DOOR ID:
758851
EIO_0647,
EIO_0648,
EIO_0649,
EIO_0650
View Structure
3
699963-700146
(-)
cobalamin
698034-699840 (-)
EIO_0720
TonB-dependent receptor
EIO_0720
Operon
DOOR ID:
758866
EIO_0717,
EIO_0718,
EIO_0719,
EIO_0720
View Structure
4
728198-728247
(+)
SAM-SAH
728254-729436 (+)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
EIO_0749
Operon
DOOR ID:
758873
EIO_0747,
EIO_0748
(cutE)
,
EIO_0749
(metK)
View Structure
5
996909-996985
(+)
sam-alpha
997047-998226 (+)
EIO_1037
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
EIO_1037
Single gene
DOOR ID:
2967409
EIO_1037
View Structure
6
1094725-1094769
(-)
mini-ykkC
1094387-1094705 (-)
EIO_1139
EIO_1139
Single gene
DOOR ID:
2967442
EIO_1139
View Structure
7
1560792-1560893
(+)
glycine
1561041-1562157 (+)
EIO_1625
Glycine cleavage system T protein
EIO_1625
Operon
DOOR ID:
759049
EIO_1625,
EIO_1626,
EIO_1627
View Structure
8
1611503-1611651
(+)
FMN
1611758-1612397 (+)
ribE-2
Riboflavin synthase subunit alpha
EIO_1675
Single gene
DOOR ID:
2967620
EIO_1675
(ribE-2)
View Structure
9
2241347-2241535
(+)
cobalamin
2241660-2242632 (+)
EIO_2301
EIO_2301
Operon
DOOR ID:
759188
EIO_2301,
EIO_2303
View Structure
10
2738520-2738632
(-)
TPP
2737481-2738468 (-)
tbpA
Thiamin transporter substrate binding subunit
EIO_2834
Operon
DOOR ID:
759298
EIO_2831,
EIO_2832,
EIO_2833,
EIO_2834
(tbpA)
View Structure
Genome:
Ketogulonicigenium vulgare Y25
(
NC_014625.1
);
Phylum:
Alphaproteobacteria
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S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014625.1";i:2;s:31:"Ketogulonicigenium vulgare Y25 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"996909-996985";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"997047-998226";i:10;s:1:"+";i:11;s:8:"EIO_1037";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:8:"EIO_1037";i:14;s:11:"Single gene";i:15;s:7:"2967409";i:16;s:8:"EIO_1037";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014625.1";i:2;s:31:"Ketogulonicigenium vulgare Y25 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1094725-1094769";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1094387-1094705";i:10;s:1:"-";i:11;s:8:"EIO_1139";i:12;s:0:"";i:13;s:8:"EIO_1139";i:14;s:11:"Single gene";i:15;s:7:"2967442";i:16;s:8:"EIO_1139";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014625.1";i:2;s:31:"Ketogulonicigenium vulgare Y25 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1560792-1560893";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1561041-1562157";i:10;s:1:"+";i:11;s:8:"EIO_1625";i:12;s:33:"Glycine cleavage system T protein";i:13;s:8:"EIO_1625";i:14;s:6:"Operon";i:15;s:6:"759049";i:16;s:26:"EIO_1625;EIO_1626;EIO_1627";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014625.1";i:2;s:31:"Ketogulonicigenium vulgare Y25 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1611503-1611651";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1611758-1612397";i:10;s:1:"+";i:11;s:6:"ribE-2";i:12;s:33:"Riboflavin synthase subunit alpha";i:13;s:8:"EIO_1675";i:14;s:11:"Single gene";i:15;s:7:"2967620";i:16;s:16:"EIO_1675(ribE-2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014625.1";i:2;s:31:"Ketogulonicigenium vulgare Y25 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2241347-2241535";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2241660-2242632";i:10;s:1:"+";i:11;s:8:"EIO_2301";i:12;s:0:"";i:13;s:8:"EIO_2301";i:14;s:6:"Operon";i:15;s:6:"759188";i:16;s:17:"EIO_2301;EIO_2303";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_014625.1";i:2;s:31:"Ketogulonicigenium vulgare Y25 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2738520-2738632";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2737481-2738468";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:45:"Thiamin transporter substrate binding subunit";i:13;s:8:"EIO_2834";i:14;s:6:"Operon";i:15;s:6:"759298";i:16;s:41:"EIO_2831;EIO_2832;EIO_2833;EIO_2834(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
