Genome: Clostridium sticklandii (NC_014614.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 130214-130293 (-)fluoride128944-130147 (-)cdu

Putative Na(+)/H(+) antiporter		CLOST_0106Single gene

DOOR ID: 2957039		CLOST_0106 (cdu) View Structure
2 168138-168241 (+)SAM168300-170613 (+)CLOST_0144

Putative 5-methyltetrahydrofolate--homocysteine methyltransferase		CLOST_0144Operon

DOOR ID: 754651		CLOST_0144,
CLOST_0145		 View Structure
3 218088-218170 (+)c-di-GMP-II218292-219972 (+)gspE

General secretory pathway component; cryptic		CLOST_0184Single gene

DOOR ID: 2957076		CLOST_0184 (gspE) View Structure
4 340619-340718 (+)purine340832-342296 (+)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CLOST_0296Operon

DOOR ID: 754676		CLOST_0296 (guaB),
CLOST_0297 (guaA)		 View Structure
5 378698-378795 (+)purine378847-380179 (+)CLOST_0332

CLOST_0332Operon

DOOR ID: 754683		CLOST_0332,
CLOST_0333 (purE),
CLOST_0334 (purC),
CLOST_0335 (purF),
CLOST_0336 (purM),
CLOST_0337 (purN),
CLOST_0338 (purH),
CLOST_0339		 View Structure
6 482161-482279 (+)FMN482487-483636 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CLOST_0410Operon

DOOR ID: 754697		CLOST_0410 (ribD),
CLOST_0411 (ribE),
CLOST_0412,
CLOST_0413 (ribE)		 View Structure
7 499380-499482 (+)glycine499667-500765 (+)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		CLOST_0426Operon

DOOR ID: 754700		CLOST_0425,
CLOST_0426 (gcvT),
CLOST_0427 (gcvH),
CLOST_0428 (gcvPA),
CLOST_0429 (gcvPB)		 View Structure
8 513404-513496 (+)c-di-GMP-I513594-514866 (+)CLOST_0437

Uncharacterized protein		CLOST_0437single gene

DOOR ID: 2957149		CLOST_0437 View Structure
9 515076-515164 (+)c-di-GMP-I515262-517257 (+)CLOST_0438

Uncharacterized protein		CLOST_0438single gene

DOOR ID: 2957150		CLOST_0438 View Structure
10 589201-589355 (+)glmS589412-591239 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CLOST_0498Single gene

DOOR ID: 2957162		CLOST_0498 (glmS) View Structure
11 961997-962119 (-)MOCO960187-961927 (-)CLOST_0827

Aldehyde:ferredoxin oxidoreductase		CLOST_0827Single gene

DOOR ID: 2957255		CLOST_0827 View Structure
12 1005454-1005537 (-)c-di-GMP-I1004638-1005439 (-)CLOST_0871

Putative Transglutaminase-like enzyme; cysteine protease		CLOST_0871single gene

DOOR ID: 2957271		CLOST_0871 View Structure
13 1125627-1125804 (+)cobalamin1126013-1127384 (+)cobB

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)		CLOST_0981Operon

DOOR ID: 754816		CLOST_0981 (cobB),
CLOST_0982 (cobD),
CLOST_0984		 View Structure
14 1261550-1261648 (+)glycine1261823-1262183 (+)grdX

GrdX protein		CLOST_1107Operon

DOOR ID: 754841		CLOST_1107 (grdX) View Structure
15 1544681-1544855 (-)lysine1544236-1544617 (-)kal

3-aminobutyryl-CoA ammonia lyase (4) (3-aminobutyryl-CoA deaminase)		CLOST_1385Operon

DOOR ID: 754900		CLOST_1384 (kce),
CLOST_1385 (kal)		 View Structure
16 1788263-1788370 (-)SAM1787091-1788075 (-)metN

Methionine import ATP-binding protein MetN 		CLOST_1652Operon

DOOR ID: 754947		CLOST_1649 (dnaE),
CLOST_1650 (metQ),
CLOST_1651 (metI),
CLOST_1652 (metN)		 View Structure
17 1892058-1892148 (-)THF1891408-1891987 (-)pabA

Aminodeoxychorismate synthase; subunit II (5)		CLOST_1764Operon

DOOR ID: 754961		CLOST_1757,
CLOST_1758 (folK),
CLOST_1759 (folB),
CLOST_1760 (folP),
CLOST_1762,
CLOST_1763 (pabB),
CLOST_1764 (pabA)		 View Structure
18 1953367-1953544 (-)cobalamin1952305-1953253 (-)yvrC

Putative iron transport system substrate-binding protein YvrC		CLOST_1827Operon

DOOR ID: 754979		CLOST_1824,
CLOST_1825,
CLOST_1826 (yvrB),
CLOST_1827 (yvrC)		 View Structure
19 1956309-1956467 (-)lysine1955249-1956143 (-)dapA

4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) 		CLOST_1830Operon

DOOR ID: 754980		CLOST_1829 (dapB),
CLOST_1830 (dapA)		 View Structure
20 2143471-2143576 (-)TPP2142897-2143398 (-)thiD

ThiW protein		CLOST_2011Operon

DOOR ID: 755016		CLOST_2007 (thiC),
CLOST_2008 (thiE),
CLOST_2009 (thiM),
CLOST_2010 (thiD),
CLOST_2011		 View Structure
21 2197286-2197476 (-)cobalamin2196168-2196999 (-)CLOST_2063

RNA-binding protein		CLOST_2063Operon

DOOR ID: 755025		CLOST_2062,
CLOST_2063		 View Structure
22 2236314-2236434 (-)MOCO2235070-2236267 (-)CLOST_2104

CLOST_2104Single gene

DOOR ID: 2957559		CLOST_2104 View Structure
23 2278954-2279056 (-)SAM2277553-2278831 (-)CLOST_2149

O-acetylhomoserine aminocarboxypropyltransferase (9)		CLOST_2149Operon

DOOR ID: 755042		CLOST_2148,
CLOST_2149		 View Structure
24 2429875-2429992 (-)FMN2429104-2429710 (-)CLOST_2303

Riboflavin transporter		CLOST_2303Single gene

DOOR ID: 2957597		CLOST_2303 View Structure
25 2480957-2481062 (-)SAM2479623-2480808 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CLOST_2356Single gene

DOOR ID: 2957605		CLOST_2356 (metK) View Structure