Genome: Paenibacillus polymyxa E681 (NC_014483.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 30392-30673 (+)ydaO-yuaA30944-32093 (+)PPE_00027

PPE_00027Single gene

DOOR ID: 2932235		PPE_00027 View Structure
2 136053-136190 (-)ydaO-yuaA135546-136047 (-)PPE_00106

Hydrolase		PPE_00106Single gene

DOOR ID: 2932266		PPE_00106 View Structure
3 429894-430009 (-)glycine428992-429682 (-)sdhB

Serine dehydratase subunit beta		PPE_00390Operon

DOOR ID: 743323		PPE_00389 (sdhA),
PPE_00390 (sdhB)		 View Structure
4 444415-444495 (-)c-di-GMP-I443474-444194 (-)PPE_00404

Uncharacterized protein		PPE_00404single gene

DOOR ID: 2932385		PPE_00404 View Structure
5 466506-466615 (-)TPP465269-466313 (-)PPE_00424

Nitrate ABC transporter substrate-binding protein		PPE_00424Single gene

DOOR ID: 2932395		PPE_00424 View Structure
6 776050-776162 (+)TPP776349-778158 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		PPE_00711Single gene

DOOR ID: 2932544		PPE_00711 (thiC) View Structure
7 829586-829687 (+)purine829835-830321 (+)PPE_00759

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		PPE_00759Operon

DOOR ID: 743393		PPE_00758,
PPE_00759,
PPE_00760,
PPE_00761 (purB)		 View Structure
8 961366-961450 (-)ZMP-ZTP960388-961255 (-)PPE_00883

Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]		PPE_00883Operon

DOOR ID: 743415		PPE_00882,
PPE_00883		 View Structure
9 992446-992557 (+)TPP992806-993403 (+)PPE_00912

Thiamine ABC transporter permease		PPE_00912Operon

DOOR ID: 743422		PPE_00912,
PPE_00913,
PPE_00914		 View Structure
10 1174394-1174437 (-)PreQ11173575-1174259 (-)PPE_01080

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		PPE_01080Operon

DOOR ID: 743458		PPE_01078,
PPE_01079,
PPE_01080		 View Structure
11 1235056-1235136 (+)c-di-GMP-I1236799-1239097 (+)PPE_01137

Uncharacterized protein		PPE_01137operon

DOOR ID: 743468		PPE_01136,
PPE_01137		 View Structure
12 1313098-1313242 (-)FMN1311977-1312925 (-)PPE_01209

Multidrug transporter		PPE_01209Single gene

DOOR ID: 2932753		PPE_01209 View Structure
13 1334046-1334218 (+)ydaO-yuaA1334333-1334729 (+)PPE_01239

PPE_01239Single gene

DOOR ID: 2932769		PPE_01239 View Structure
14 1382777-1382971 (+)cobalamin1383179-1384187 (+)PPE_01286

ABC transporter substrate-binding protein		PPE_01286Operon

DOOR ID: 743501		PPE_01286,
PPE_01287,
PPE_01288,
PPE_01289,
PPE_01290,
PPE_01291 (cobS),
PPE_01292 (cobQ)		 View Structure
15 1395609-1395654 (+)PreQ11395657-1396356 (+)PPE_01296

Probable queuosine precursor transporter (Q precursor transporter)		PPE_01296Single gene

DOOR ID: 2932792		PPE_01296 View Structure
16 1509642-1509767 (+)SAM1509885-1510803 (+)metA

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		PPE_01406Single gene

DOOR ID: 2932845		PPE_01406 (metA) View Structure
17 2628533-2628631 (+)ykkC-yxkD2628808-2629189 (+)PPE_02382

PPE_02382Single gene

DOOR ID: 2933296		PPE_02382 View Structure
18 2765189-2765356 (-)ydaO-yuaA2764513-2765182 (-)PPE_02510

PPE_02510Single gene

DOOR ID: 2933365		PPE_02510 View Structure
19 2802470-2802578 (-)TPP2801610-2802204 (-)PPE_02543

Regulatory protein		PPE_02543Operon

DOOR ID: 743746		PPE_02539,
PPE_02540,
PPE_02541,
PPE_02542,
PPE_02543		 View Structure
20 3053323-3053496 (-)FMN3052325-3052991 (-)ribE

Riboflavin synthase subunit alpha 		PPE_02795Operon

DOOR ID: 743800		PPE_02793 (ribH),
PPE_02794,
PPE_02795 (ribE)		 View Structure
21 3148068-3148169 (-)yybP-ykoY3147227-3147917 (-)PPE_02892

Membrane protein		PPE_02892Single gene

DOOR ID: 2933506		PPE_02892 View Structure
22 3875952-3876143 (+)glycine3876319-3877420 (+)gcvT

Aminomethyltransferase (0) (Glycine cleavage system T protein)		PPE_03544Single gene

DOOR ID: 2933777		PPE_03544 (gcvT) View Structure
23 4053471-4053565 (-)glycine4051892-4053407 (-)PPE_03707

Sodium:alanine symporter		PPE_03707Single gene

DOOR ID: 2933823		PPE_03707 View Structure
24 4053584-4053660 (-)glycine4051892-4053407 (-)PPE_03707

Sodium:alanine symporter		PPE_03707Single gene

DOOR ID: 2933823		PPE_03707 View Structure
25 4082065-4082167 (+)TPP4082273-4082993 (+)PPE_03732

Aminopyrimidine aminohydrolase 		PPE_03732Operon

DOOR ID: 743987		PPE_03732,
PPE_03733,
PPE_03734,
PPE_03735		 View Structure
26 4222597-4222749 (-)ydaO-yuaA4220815-4222156 (-)PPE_03872

V-type sodium ATP synthase subunit J		PPE_03872Operon

DOOR ID: 744014		PPE_03871,
PPE_03872		 View Structure
27 4261779-4261918 (-)SAM4260619-4261642 (-)PPE_03912

Methionine import ATP-binding protein MetN 		PPE_03912Operon

DOOR ID: 744020		PPE_03910,
PPE_03911,
PPE_03912		 View Structure
28 4386420-4386622 (+)lysine4386756-4388223 (+)PPE_04049

Gamma-aminobutyrate permease		PPE_04049Single gene

DOOR ID: 2933974		PPE_04049 View Structure
29 4615027-4615256 (-)glmS4612971-4614804 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		PPE_04214Single gene

DOOR ID: 2934047		PPE_04214 (glmS) View Structure
30 4897436-4897517 (-)ZMP-ZTP4896627-4897215 (-)PPE_04469

PPE_04469Single gene

DOOR ID: 2934122		PPE_04469 View Structure
31 4974868-4975055 (-)cobalamin4972778-4974557 (-)PPE_04548

Cobalt-precorrin-3B C(17)-methyltransferase		PPE_04548Operon

DOOR ID: 744137		PPE_04546 (cobK),
PPE_04547,
PPE_04548		 View Structure
32 5003142-5003338 (+)cobalamin5003498-5005817 (+)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		PPE_04575Operon

DOOR ID: 744145		PPE_04574,
PPE_04575 (metE)		 View Structure
33 5079993-5080092 (-)purine5078744-5079923 (-)PPE_04646

Major facilitator transporter		PPE_04646Single gene

DOOR ID: 2934189		PPE_04646 View Structure
34 5208496-5208689 (-)cobalamin5206698-5208279 (-)PPE_04759

Peptide ABC transporter substrate-binding protein		PPE_04759Operon

DOOR ID: 744179		PPE_04755,
PPE_04756,
PPE_04757,
PPE_04758,
PPE_04759		 View Structure
35 5211511-5211614 (-)purine5210735-5211353 (-)PPE_04761

Xanthine phosphoribosyltransferase (XPRTase) (2)		PPE_04761Operon

DOOR ID: 744180		PPE_04760,
PPE_04761		 View Structure