About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
282591-282744
(+)
cobalamin
282933-284787 (+)
Bresu_0294
TonB-dependent receptor
Bresu_0294
Single gene
DOOR ID:
2916359
Bresu_0294
View Structure
2
1071715-1071832
(-)
SAM
1070598-1071636 (-)
Bresu_1067
Homoserine O-acetyltransferase (1)
Bresu_1067
Operon
DOOR ID:
734891
Bresu_1066,
Bresu_1067
View Structure
3
2730438-2730549
(-)
glycine
2729169-2730285 (-)
Bresu_2718
Glycine cleavage system T protein
Bresu_2718
Operon
DOOR ID:
735255
Bresu_2715,
Bresu_2716,
Bresu_2717,
Bresu_2718
View Structure
4
3300994-3301102
(+)
TPP
3301156-3303076 (+)
Bresu_3209
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bresu_3209
Single gene
DOOR ID:
2917301
Bresu_3209
View Structure
Genome:
Brevundimonas subvibrioides ATCC 15264
(
NC_014375.1
);
Phylum:
Alphaproteobacteria
a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014375.1";i:2;s:39:"Brevundimonas subvibrioides ATCC 15264 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"282591-282744";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"282933-284787";i:10;s:1:"+";i:11;s:10:"Bresu_0294";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"Bresu_0294";i:14;s:11:"Single gene";i:15;s:7:"2916359";i:16;s:10:"Bresu_0294";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014375.1";i:2;s:39:"Brevundimonas subvibrioides ATCC 15264 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1071715-1071832";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1070598-1071636";i:10;s:1:"-";i:11;s:10:"Bresu_1067";i:12;s:34:"Homoserine O-acetyltransferase (1)";i:13;s:10:"Bresu_1067";i:14;s:6:"Operon";i:15;s:6:"734891";i:16;s:21:"Bresu_1066;Bresu_1067";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014375.1";i:2;s:39:"Brevundimonas subvibrioides ATCC 15264 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2730438-2730549";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2729169-2730285";i:10;s:1:"-";i:11;s:10:"Bresu_2718";i:12;s:33:"Glycine cleavage system T protein";i:13;s:10:"Bresu_2718";i:14;s:6:"Operon";i:15;s:6:"735255";i:16;s:43:"Bresu_2715;Bresu_2716;Bresu_2717;Bresu_2718";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014375.1";i:2;s:39:"Brevundimonas subvibrioides ATCC 15264 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3300994-3301102";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3301156-3303076";i:10;s:1:"+";i:11;s:10:"Bresu_3209";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Bresu_3209";i:14;s:11:"Single gene";i:15;s:7:"2917301";i:16;s:10:"Bresu_3209";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
