About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
502858-502985
(-)
TPP
500716-502708 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XNC1_0586
Operon
DOOR ID:
714917
XNC1_0582
(thiG)
,
XNC1_0583
(thiS)
,
XNC1_0584
(thiF)
,
XNC1_0585
(thiE)
,
XNC1_0586
(thiC)
View Structure
2
1327214-1327370
(+)
MOCO
1327575-1328340 (+)
XNC1_1448
Molybdopterin biosynthesis protein A
XNC1_1448
Operon
DOOR ID:
715095
XNC1_1448,
XNC1_1449
(moaC)
,
XNC1_1450
(moaD)
,
XNC1_1451
(moaE)
View Structure
3
1839955-1840115
(+)
yybP-ykoY
1840127-1840748 (+)
yebN
Putative manganese efflux pump MntP
XNC1_1936
Single gene
DOOR ID:
2877246
XNC1_1936
(yebN)
View Structure
4
2653368-2653460
(-)
TPP
2652524-2653322 (-)
thiD
Bifunctional: hydroxy-methylpyrimidine kinase (HMP kinase) hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase)
XNC1_2689
Single gene
DOOR ID:
2877541
XNC1_2689
(thiD)
View Structure
5
2884032-2884127
(-)
preQ1-II
2883624-2883954 (+)
XNC1_2878
XNC1_2878
Single gene
DOOR ID:
2877613
XNC1_2878
View Structure
6
3494358-3494404
(+)
mini-ykkC
3494429-3494744 (+)
sugE
XNC1_3613
Operon
DOOR ID:
715504
XNC1_3611
(efp)
,
XNC1_3612,
XNC1_3613
(sugE)
,
XNC1_3614
View Structure
7
3921528-3921632
(+)
TPP
3921721-3922735 (+)
tbpA
Thiamin transport protein (ABC superfamily; peri_bind)
XNC1_4053
Operon
DOOR ID:
715591
XNC1_4053
(tbpA)
,
XNC1_4054
(thiP)
,
XNC1_4055
(thiQ)
View Structure
8
3954654-3954853
(-)
FMN
3953880-3954534 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
XNC1_4082
Operon
DOOR ID:
715596
XNC1_4081,
XNC1_4082
(ribB)
View Structure
9
4270407-4270456
(-)
SAM-SAH
4269205-4269580 (+)
XNC1_4458
Putative MazF protein
XNC1_4458
Operon
DOOR ID:
715672
XNC1_4456,
XNC1_4457,
XNC1_4458
View Structure
Genome:
Xenorhabdus nematophila ATCC 19061
(
NC_014228.1
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_014228.1";i:2;s:35:"Xenorhabdus nematophila ATCC 19061 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"502858-502985";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"500716-502708";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"XNC1_0586";i:14;s:6:"Operon";i:15;s:6:"714917";i:16;s:79:"XNC1_0582(thiG);XNC1_0583(thiS);XNC1_0584(thiF);XNC1_0585(thiE);XNC1_0586(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_014228.1";i:2;s:35:"Xenorhabdus nematophila ATCC 19061 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1327214-1327370";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1327575-1328340";i:10;s:1:"+";i:11;s:9:"XNC1_1448";i:12;s:36:"Molybdopterin biosynthesis protein A";i:13;s:9:"XNC1_1448";i:14;s:6:"Operon";i:15;s:6:"715095";i:16;s:57:"XNC1_1448;XNC1_1449(moaC);XNC1_1450(moaD);XNC1_1451(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_014228.1";i:2;s:35:"Xenorhabdus nematophila ATCC 19061 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1839955-1840115";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1840127-1840748";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:9:"XNC1_1936";i:14;s:11:"Single gene";i:15;s:7:"2877246";i:16;s:15:"XNC1_1936(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_014228.1";i:2;s:35:"Xenorhabdus nematophila ATCC 19061 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2653368-2653460";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2652524-2653322";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:113:"Bifunctional: hydroxy-methylpyrimidine kinase (HMP kinase) hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase) ";i:13;s:9:"XNC1_2689";i:14;s:11:"Single gene";i:15;s:7:"2877541";i:16;s:15:"XNC1_2689(thiD)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_014228.1";i:2;s:35:"Xenorhabdus nematophila ATCC 19061 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2884032-2884127";i:6;s:1:"-";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:15:"2883624-2883954";i:10;s:1:"+";i:11;s:9:"XNC1_2878";i:12;s:0:"";i:13;s:9:"XNC1_2878";i:14;s:11:"Single gene";i:15;s:7:"2877613";i:16;s:9:"XNC1_2878";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_014228.1";i:2;s:35:"Xenorhabdus nematophila ATCC 19061 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3494358-3494404";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3494429-3494744";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"XNC1_3613";i:14;s:6:"Operon";i:15;s:6:"715504";i:16;s:50:"XNC1_3611(efp);XNC1_3612;XNC1_3613(sugE);XNC1_3614";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_014228.1";i:2;s:35:"Xenorhabdus nematophila ATCC 19061 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3921528-3921632";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3921721-3922735";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:54:"Thiamin transport protein (ABC superfamily; peri_bind)";i:13;s:9:"XNC1_4053";i:14;s:6:"Operon";i:15;s:6:"715591";i:16;s:47:"XNC1_4053(tbpA);XNC1_4054(thiP);XNC1_4055(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_014228.1";i:2;s:35:"Xenorhabdus nematophila ATCC 19061 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3954654-3954853";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3953880-3954534";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"XNC1_4082";i:14;s:6:"Operon";i:15;s:6:"715596";i:16;s:25:"XNC1_4081;XNC1_4082(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_014228.1";i:2;s:35:"Xenorhabdus nematophila ATCC 19061 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4270407-4270456";i:6;s:1:"-";i:7;s:7:"SAM-SAH";i:8;s:0:"";i:9;s:15:"4269205-4269580";i:10;s:1:"+";i:11;s:9:"XNC1_4458";i:12;s:21:"Putative MazF protein";i:13;s:9:"XNC1_4458";i:14;s:6:"Operon";i:15;s:6:"715672";i:16;s:29:"XNC1_4456;XNC1_4457;XNC1_4458";i:17;s:0:"";i:18;s:15:"View Structure ";}}
